ANNEX – 5
RECOMBINANT DNA
SAFETY GUIDELINES, 1990
Department of
Biotechnology, Ministry of Science and Technology, Govt. of India
The new capabilities to
manipulate the genetic material present tremendous potential and find use in
many novel experiments and applications. These developments have generated a
sense of concern among scientists working in biological areas and others to
find ways how safely the research in the field should be carried out and means
to regulate work involving pathogenic microorganisms and genes of virulence.
Several countries have formulated safety guidelines and regulations for
research in the field of recombinant DNA, large scale use of them in production
process and their applications in the environment. Considering the possible
incremental risks associated with the use of new techniques in laboratory
research with pathogenic microorganisms, the National Biotechnology Board
issued a set of safety guidelines for India in 1983 to ensure the safety of
workers in the laboratory environment. While framing the guidelines, the
Committee took into account the local factors such as resistance to infection
(immunity), host parasite burden in the community, laboratory environment and
chances of survival and growth of altered organisms under the tropical
conditions.
Remarkable developments have
ensured in the last few years in the field of genetic manipulation and the
scenario has shifted from the laboratories to the market place elsewhere. In
India there is a growing awareness of the commercial potential of Biotechnology
and efforts are being made to promote large scale use of indigenously relevant
biotechnologies. A large number of research institutions in Government,
Universities and private R&D labs have active biotech programmes where
research is being done in both in basic and applied fronts utilising
microorganisms plant and animals, tissue culture and cell lines and on
development of vaccines towards communicable diseases of both men and animals.
A good deal of effort is being made in the areas of diagnostics,
biofertilizers, biocides, fertility control, tissue culture of high value crops
to develop technologies and useful products. The successes in indigenous
research efforts would soon be translated into commercially viable technologies
through clearing houses with major R&D Centres, University shops with
academic institutions and by the industry itself.
The Biotechnology Safety
Guidelines could never be one time exercise as knowledge is ever expanding and
the Department of Biotechnology which has the mandate in this area, set up the
rDNA Committee to prepare a modified draft on the basis of current scientific
information and from the experience gained locally and outside the country on
the use of the new technique in the area of research, possible manufacture and
applications.
The guidelines cover areas
of research involving genetically engineered organism. It also deals with
genetic transformation of green plants, rDNA technology in vaccine development
and on large scale production and dekliberate/ accidental release of organisms,
plants, animals and products derived by rDNA technology into the environment.
The issues relating to Genetic Engineering of human embryos, use of embryos and
foetuses in research and human germ line gene therapy are excluded from the
scope of the guidelines.
While preparing the revised
guidelines the Committee and its sub-groups have met 4 times and have taken
note of the guidelines currently in use in other countries. The evolution of
the guidelines and updation have gone through the process of consultation with
experts, academies, agencies and industry and the concerned Ministries with a
view to gain general acceptance and broad consensus.
The guidelines are in
respect of safety measures for the research activities, large scale use and
also the environmental impact during field applications of genetically altered
material products.
SCOPE OF THE REVISED GUIDELINES
1. Research: The levels of the risk and the classification of the
organisms within these levels based on pathogenicity and local prevalence of
diseases and on epidemic causing strains in India are defined in the
guidelines. Some of the microorganisms not native to the country have been
assigned to a special category requiring highest degree of safety. These
include Lassa virus, Yellow fever virus etc. Appropriate practices, equipment
and facilities are recommended for necessary safeguards in handling organisms,
plants and animals in various risk groups. The guidelines employ the concept of
physical and biological containment and also based upon the principle of good
laboratory practice (GLP). In this context, biosafety practices as recommended
in the WHO laboratory safety Manual on genetic engineering techniques involving
microorganisms of different risk groups have incorporated in the guidelines
(Chapter IV).
2. Large scale operations: The concern does not
diminish when it comes to the use of recombinant organisms scale fermentation
operations on large scale fermentation operations or applications of it in the
environment. As such, the guidelines prescribe criteria for good large scale
practices (GLSP) for using recombinant organisms. These include measures such as proper engineering for containment,
quality control, personnel protection, medical surveillance, etc.
3. Environmental risks: Application and release of engineered
organisms into the environment could lead to ecological consequences and
potential risks unless necessary safeguards are taken into account. The
guidelines prescribe the criteria for assessment of the ecological aspects on a
case by case basis for planned introduction of rDNA organism into the
environment. It also suggests regulatory measures to ensure safety for import
of genetically engineered materials, plants and animals. The recommendations
also cover the various quality control methods needed to establish the safety,
purity and efficacy of rDNA products.
1. Definition of recombinant DNA: Recombinant
deoxyribonucleic acid (rDNA) by definition involves in vitro introduction of different segments of DNA (one being the
vector and the others normally unrelated DNA sequences) that are capable of
replication in a host cell either autonomously or as an integral part of host's
genome and maintenance of their continued propagation. This will include all
types of cell fusion, microinjection of DNA or RNA or parts or all of
chromosomes, genetic engineering including self cloning and deletion as well as
cell hybridation, transformation and other types of virus or pathogen
introduction into unnatural hosts.
The organisms involved may
belong to these categories:
1. i) Intergeneric
organisms
ii) Well defined organisms with non-coding
regulatory regions
2. i) Biological agents
whose source of DNA is a pathogen
ii) Organisms
that are generally recognised as non-pathogenic and may imbibe the
characteristics
of a pathogen on genetic manipulation.
2.
Classification of a pathogenic
microorganisms
2.1
The classification of infective
microorganisms are drawn up under 4 risk groups in increasing order of risk
based on the following parameters:
·
pathogenecity
of the agent
·
modes
of transmission and host range of the agent
·
availability
of effective preventive treatments or curative medicines
·
capability to cause diseases to humans/animals/plants
·
epidemic
causing strains in India
The above mentioned
parameters may be influenced by levels of immunity, density and movement of
host population, presence of vectors for transmission and standards of environmental
hygiene.
An inventory of pathogenic
organisms classified in different groups is provided in Chapter V: A1. The
scientific considerations for assessment of potential risks in handling of
pathogenic organisms include the following:
i)
Characterisation
of donor and recipient organisms
ii)
Characterisation
of the modified organism
iii)
Expression
and properties of the gene product
2.2 Based on the risk assessment
information, the probability of risk could be further assigned certain
quantitative values (Chapter V: A7) for categorisation of experiments in terms
of the following:
i)
access
factor of the organism
ii)
expression
factor of DNA
iii)
damage
factor of the Biologically active substance
3.
Containment
Containment
facilities for different Risk Groups as per the recommendations of World Health
Organization (WHO)
The term
"Containment" is used in describing the safe methods for managing
infectious agents in the laboratory environment where they are being handled or
maintained.
To
reduce exposure of laboratory workers, other persons, and outside environment
to potentially hazardous agents.
3.1 Biological
containment (BC): In consideration of biological containment, the vector
(plasmid, organelle, or virus) for the recombinant DNA and the host (bacterial,
plant, or animal cell) in which the vector is propagated in the laboratory will
be considered together. Any combination of vector and host which is to provide
biological containment must be chosen or constructed to limit the infectivity
of vector to specific hosts and control the host-vector survival in the
environment. These have been categorized into two levels - one permitting
standard biological containment and the other even higher that relates to
normal and disabled host-vector systems respectively (Chapter V: A3).
3.2 Physical
Containment (PC): The objective of physical containment is to confine
recombinant organisms thereby preventing the exposure of the researcher and the
environment to the harmful agents. Physical containment is achieved through the
use of i) Laboratory Practice, ii) Containment Equipment, and iii) Special
Laboratory Design. The protection of personnel and the immediate laboratory
environment from exposure to infectious agents, is provided by good
microbiological techniques and the use of appropriate safety equipment,
(Primary Containment).
The protection of the
environment external to the laboratory from exposure to infectious materials,
is provided by a combination of facility design and operational practices,
(Secondary Containment).
3.3 Elements
of Containment: The three elements of containment include laboratory
practice and technique, safety equipment and facility design.
i) Laboratory
practice and technique:
·
Strict
adherence to standard microbiological practices and techniques
·
Awareness
of potential hazards
·
Providing/arranging
for appropriate training of personnel
·
Selection
of safety practices in addition to standard laboratory practices if required
·
Developing
of adopting a biosafety or operations manual which identifies the hazards
ii) Safety equipment (primary
barriers): Safety equipment includes biological safety cabinets and a
variety of enclosed containers (e.g. safety centrifuge cup). The biological
safety cabinet (BSC) is the principal device used to provide containment of
infectious aerosols generated by many microbiological procedures. Three types
of BSCs (Class I, II, III) are used in microbiological laboratories. Safety
equipment also includes items for personal protection such as gloves, coats,
gowns, shoe covers, boots, respirators, face shields and safety glasses, etc.
iii) Facility Design (Secondary barriers): The design of the facility is
important in providing a barrier to protect persons working in the facility but
outside of the laboratory and those in the community from infectious agents
which may be accidentally released from the laboratory. There are three types
of facility designs: viz, the Basic Laboratory (for Risk Group I and II), the
Containment Laboratory (for Risk Group III) and the Maximum Containment
Laboratory (for Risk Group IV).
4. Bio-safety levels: It consists of a combination of laboratory practices and techniques, safety equipment and laboratory facilities appropriate for the operations performed and the hazard posed by the infectious agents. The guidelines for Microbiological and Biomedical Laboratories suggest four Biosafety levels in incremental order depending on the nature of work. Additional flexibility in containment levels can be obtained by combination of the physical with the biological barriers. The proposed safety levels for work with recombinant DNA technique take into consideration the source of the donor DNA and its disease-producing potential. These four levels corresponds to (P1<P2<P3<P4) facilities approximate to 4 risk groups assigned for etiologic agents.
These levels and the
appropriate conditions are enumerated as follows:
4.1 Biosafety
Level 1: These practices, safety equipment and facilities are appropriate
for undergraduate and secondary educational training and teaching laboratories
and for other facilities in which work is done with defined and characterised
strains of viable microorganisms not known to cause disease in healthy adult
human. No special accommodation or equipment is required but the laboratory
personnel are required to have specific training and to be supervised by a
scientist with general training in microbiology or a related science.
4.2 Biosafety
Level 2: These practices, safety equipment and facilities are applicable in
clinical, diagnostic, teaching and other facilities in which work is done with
the broad spectrum of indigenous moderate-risk agents present in the community
and associated with human disease of varying severity. Laboratory workers are
required to have specific training in handling pathogenic agents and to be
supervised by competent scientists. Accommodation and facilities including
safety cabinets are prescribed, especially for handling large volume are high
concentrations of agents when aerosols are likely to be created. Access to the
laboratory is controlled.
4.3 Biosafety
level 3: These practices, safety equipment and facilities are applicable to
clinical, diagnostic, teaching research or production facilities in which work
is done with indigenous or exotic agents where the potential for infection by
aerosols is real and the disease may have serious or lethal consequences.
Personnel are required to have specific training in work with these agents and
to be supervised by scientists experienced in this kind of microbiology.
Specially designed laboratories and precautions including the use of safety
cabinets are prescribed and the access is strictly controlled.
4.4 Biosafety
level 4: These practices, safety equipment and facilities are applicable to
work with dangerous and exotic agents which pose a high individual risk of
life-threatening disease. Strict training and supervision are required and the
work is done in specially designed laboratories under stringent safety conditions,
including the use of safety cabinets and positive pressure personnel suits .
Access is strictly limited.
A specially designed suit
area may be provided in the facility. Personnel who enter this area wear a
one-piece positive pressure suit that is ventilated by a life support system.
The life support system is provided with alarms and emergency break-up
breathing air tanks. Entry to this area is through an airlock fitted with air
tight doors. A chemical shower is provided to decontaminate the surface of the
suit before the worker leaves the area. The exhaust air form the suit area is
filtered by two sets of HEPA filters installed in the series. A duplicate
filtration unit, exhaust fan and an automatically starting emergency power source are provide. The air pressure
within the suit area is lower than that of
any adjacent area. Emergency lighting and communication systems are
provided. All penetrations into the inner shell of the suit area are sealed. A
double door autoclave is provided for decontamination of disposable waste
materials from the suit area.
5. Guidelines for rDNA research
activities: The guidelines stipulate three
categories of research activities, These are:
5.1 Category I: Which are exempt for the
purpose of intimation and approval of competent authority.
(i)
The
experiments involving self cloning, using strains and also inter-species
cloning belonging to organism in the same exchanger group (Vide Chapter-V A4,
A5).
(ii)
Organelle
DNA including those from chloroplasts and mitochondria.
(iii)
Host-vector
systems consisting of cells in culture and vectors, either non-viral or viral
containing defective viral genomes (except from cells known to harbour class
III, IV and special category etiologic agents listed under Chapter V: A1.
5.2 Category
II: Those requiring prior intimation of competent authority.
(i)
Experiments
falling under containment levels II, III and IV.
(ii)
Experiment
wherein DNA or RNA molecules derived from any source except for eukaryotic
viral genome may be transferred to any non-human vertebrate or any invertebrate
organisms and propagated under conditions of physical containment PC1 and
appropriate to organism under study.
(iii)
Experiments
involving non pathogen DNA vector systems and regeneration from single cells.
(iv)
Large
scale use of recombinants made by self cloning in systems belonging to exempt
category (e.g. E.coli, Saccharomyces, and
B. subtilis)
5.3 Category
III: Those requiring review and approval of competent authority before
commencement.
(i)
Toxin
gene clonings : A list of toxins classified based on their potential toxicity
is listed in Chapter V - A6. The number of plasmid toxin gene clonings at
present going on are only three viz. B.
subtilis and B. sphericus toxin
genes are cloned in B. subtilis and
cholera toxin genes and B. thuringiensis crystal
protein genes cloned in E.coli K12.
These toxins gene cloning are being done under PC1 and BC 1 Containment
conditions. All toxin gene cloning experiments producing LD50 less than 50
ug/kg of body weight of vertebrates (Chapter V-A6) or large scale growing may
be referred to Institutional Biosafety Committee (IBSC) for clearance.
(ii)
Cloning
of genes for vaccine production: e.g. Rinderpest and leprosy antigens.
Rinderpest has been classified under Risk Group II in view of the common
incidence of the disease in India, though it is listed under special category
in the Centres for Disease Control & National Institute of Health (CDC-NIH)
system. Similarly, leprosy afflicts a large segment of population which calls
for concerted programme to control the disease by vaccination and detection at
early stages through immunodiagnostic tests. The containment should be decided
by Review Committee on Genetic Manipulation (RCGM) on a case by case basis on
experiment utilising DNA from non-defective genomes of organisms recognised as
pathogen. In view of no demonstrated risk from handling free M. laprae antigens, inactivated whole
cells as well as antigens can be assigned to Risk Group I. The details of the
rDNA technology in development of vaccines for human and animal health giving
containment conditions for observance of safeguards in large scale operations
are given in Chapter V-B.
(iii)
Cloning
of mosquito and tick DNA experiments should be prescribed on a case by case
basis since these are natural vectors for certain endemic viral and parasitic
diseases.
(iv)
Genes
coding for antibiotic resistance into pathogenic organisms which do not
naturally possess such resistance.
(v)
Introduction
into cultured human cells of recombinant DNA molecules containing complete
genes of potentially oncogenic viruses or transformed cellular genes.
(vi)
Introduction
into animal cells of unidentified DNA molecules derived from cancer cells or in
vitro transformed cells.
(vii)
Experiments
involving the use of infectious animal and plant viruses in tissue culture
systems.
(viii)Experiments involving gene
transfer to whole plants and animals.
(ix)
Cell
fusion experiments of Animal cells containing sequences from viral vectors if
the sequence lead to transmissible infection either directly or indirectly as a
result of complementation or recombination in the animals. For experiments
involving recombinant DNA of higher class organisms using whole animals will be
approved on case by case following IBSC review.
(x)
Transgenosis
in animal experiments : Transgenosis method is used to transform animal cells
with foreign DNA by using viruses as vectors or by microinjection of DNA into
eggs and pre-embryos. The expression of an inserted gene can be influenced both
by the regulatory sequences associated with the gene and the sequences present
at the site of integration of host genome. At present, there is no way to
control where a gene is inserted into the chromosome of either an animal or
plant cell. Yet this site of insertion can affect not only the expression of
the interested gene but also the regulation of the host cells- DNA e.g. by
non-specific activation of cellular protooncogenes.
(xi)
All
experiments involving the genetic manipulation of plant pathogens and the use
of such genetically manipulated plant pathogens would require approval of
competent authority (IBSC).
(xii)
Transfer
of genes with known toxicity to plants using Agrobacterium tumefaciens or other vectors. Attempts are under way
using Ti-plasmid, A. tumefaciens and
other vectors to transfer toxin-encoding genes that enable plants to make their
own insecticide, resist infections or tolerate a variety of environmental
stresses. Case by case clearance is needed though exemption may be made for the
use of well characterized vectors and non-toxic genes.
(xiii)
In
case of plant viruses, permission may be obtained only when it is known that
there is a chance of non-species specific spread of infection to plants that
could produce changes in pathogenicity, host range or vector transmissibility.
The growth of whole plants, propagation of genetically manipulated organisms in
plants, regeneration of plants from cells transformed by manipulated plant
pathogen vector would require containment conditions that are elaborated in
Chapter V: C2.
(xiv)
Experiments
requiring field testing and release of rDNA engineered microorganisms and
plants (Chapter V: C3).
(xv)
Experiments
involving engineered microbes with deletions and certain rearrangements.
(xvi)
Diagnostics:
No major risk can be foreseen on diagnostics involving in vitro tests. But for
diagnostics involving in vivo tests, specific containment levels have to be
prescribed on case by case basis. For example, tuberculin moiety could be
cloned and used for in vivo hypersensitivity test as a diagnostic method.
(xvii)Gene therapy for hereditary
diseases of genetic disorders.
6. Large scale experiments: Large scale production of
bio-molecules from genetically engineered microorganisms have not just been
taken up in the country. However, the use of recombinant organisms in large
scale operations is expected in the near future.
6.1 In the guidelines, experiments beyond
20 litres capacity for research as well as industrial purposes are included in
the category of large scale experimentation/operations.
6.2 For such activities it is recommended
that one should seek approval of the competent authority as described in
Chapter-III. In order to seek approval it will be necessary to furnish the
relevant details in a prescribed format on the lines suggested by GEAC.
6.3 For good large scale practice (GLSP)
as well as levels of containment, the following principles of occupational
safety and hygiene will be applied.
i)
to
keep work place and environment exposure to any physical, chemical or
biological agent to the lowest practicable level;
ii)
to
exercise engineering control measures at source and to supplement these with
appropriate personal protective clothing and equipment when necessary ;
iii)
to
test adequately and maintain control measures and equipment ;
iv)
to
test when necessary for the presence of viable process organisms outside the
primary physical containment ;
v)
to
provide training of personnel
vi)
to
formulate and implement local code of practice for the safety of personnel.
6.4 The
following safety criteria are to be compiled with for good large scale
practice:
i)
The
host organism should not be a pathogen, should not contain adventitious agents,
and should have an extended history of safe use, or have built-in environmental
limitations that permit optimum growth in the bioreactor but limited survival
with no adverse consequences in the environment.
ii)
The
vector/insert should be well characterised and free from known harmful
sequences; the DNA should be limited in size as much as possible to perform the
intended function; should not increase the stability of the recombinant in the
environment unless that is a requirement of the intended function; should be
poorly mobilisable; and should not transfer any resistance markers to
microorganisms not known to acquire them naturally if such acquisition could
compromise the use of a drug to control disease agents in human or veterinary
medicine or agriculture.
iii)
The
genetically manipulated organism should not be a pathogen and should be
assessed as being as safe in the bio-reactor as the host organism, and without
adverse consequences in the environment (Chapter V:B2)
6.5 The physical containment conditions
that should be ensured for large scale experiments and production activities
are given in Chapter V: B1.
7.
Release to the environment:
7.1 Depending on the types of organisms
handled and assessment of potential risks involved appropriate containment
facilities must be provided to ensure safety of worker and to prevent unwanted
release in the environment.
7.2 Biowastes resulting from laboratory
experiments, in industrial operations should be properly treated so that the
pathogenicity of genetically engineered organisms are either destroyed or
rendered harmless before disposal in the environment. Special facilities should
be created for disposal of experimental animals. All refuse and carcasses must
be incinerated. Exemption/relaxation of safety measures on specific cases may
be considered based on the risk assessment criteria.
7.3 For planned release of organisms into
the environment, the following points should be taken into consideration:
i)
Geographical
location, size and nature of the site of release and physical and biological
proximity to man and other significant biota. In case of plants, proximity to
plants which might be cross pollinated.
ii)
Details
of target ecosystem and the predicted effects of release on that ecosystem.
iii)
Method
and amount of release, rate frequency and duration of application.
iv)
Monitoring
capabilities and intentions: how many novel organisms be traced, e.g. to
measure effectiveness of application.
v)
Onsite
worker safety procedures and facilities.
vi)
Contingency
plans in event of unanticipated effects of novel organisms.
It is important to evaluate
rDNA modified organism for potential risk prior to application in agriculture
and environment. Prior to introduction of micro-organisms, properties of the
organism, the possible interaction with other disease causing agents and the
infected wild plant species should be evaluated. An independent review of
potential risks should be conducted on a case by case basis prior to application.
Details of points to be taken into account for risk assessment of genetically
altered organisms while making proposals for release applications are given at
Chapter V:D1. The bio-hazard evaluation of viral, bacterial, insecticidal
agents for field applications are provided in Chapter V:C4. Development of
organisms for agricultural or environmental applications should be conducted in
a stepwise fashion, moving where appropriate, from the laboratory to the growth
chamber and green house under containment conditions and good laboratory
practice. It should be done under expert advice of competent authority with
regard to the area to be covered taking into account the experimental design
and condition of isolation. Release of any strain for field testing should be
done with the permission of Genetic Engineering Approval Committee (GEAC) as
mentioned at Chapter III.
Though, manipulation of
plants under containment would not require regulatory clearance of GEAC,
testing of altered plant material in the environment however should follow
regulatory guidelines seeking experimental field use permit from GEAC even
though prima facie, plant material appears safe to test under containment
conditions. License for large scale release in case of genetically engineered plants
tested pathogens is required.
8.
Import and shipment:
8.1 The import or receipt of etiologic
agents and vectors of human and animal disease or their carriers is subject to
the quarantine regulations. Permits authorising the import or receipt of
regulated materials for research (e.g. toxin genes, hybridomas, cell cultures,
organelle) and specifying conditions under which the agent or vector is
shipped, handled and used are issued by the Review Committee on Genetic
Manipulation while large scale imports for industrial use are regulated by
Genetic Engineering Approval Committee and are mentioned in Chapter III. Safety
testing may be required to ensure that it is far from risk.
8.2 The Inter-State shipment of indigenous
etiologic agents, diagnostic specimens and biologicals products is subject to
applicable packaging, labeling and shipping requirements specified for
etiologic agents. Packaging and labeling requirements for Inter-state shipment
of etiologic agents are summarised and illustrated in the rDNA booklet. All
such shipments would need the clearance of Institutional Biosafety Committee
mentioned in Chapter III.
9. Quality
control of biologicals produced by rDNA technology: The general
regulations normally applicable for biologicals are applicable to the
recombinant DNA products. The specific relevant aspects to a particular product
should be discussed with the appropriate Government Agency on a case by case
basis.
9.1 A new license for the product or drug
application would be required on products made of recombinant DNA technology
even if the product is considered to be chemically and physically similar to
the naturally occurring substance or previously approved product produced in
conventional system.
9.2 A recombinant DNA product demonstrated
to be identical to normally occurring substance would not require toxicological
and pharmacological data if the information is already available at dose levels
of intended use but fresh clinical trials will be necessary on all such
products.
9.3 The booklet prescribes the various
control methods needed to establish the safety, purity and efficiency of rDNA
products (Chapter V: B4).
9.4 Animal feeds: The prevention of food
adulteration Act 1954 make it an offence to sell any material for use as a
feeding stuff containing any ingredient which is deleterious to animals.
The use of stilbesterol,
vitamin B12, antibiotics, direct or indirect sources of nitrogen such as urea
and its derivatives, amino acids as additives in forage and animal feed to
enhance nutritive effect are in practice. The possibilities of introduction of
products derived by biotechnological process such as single cell protein,
enzymes and also the growing interest in probiotics i.e. living organisms that
are fed to animals to improve performance and use of micro-organisms as silage
aids may find means to improve the overall health of animals. The control of
these products is the same in principle whether they are produced by chemical
or biotechnological process provided the purity criteria are met.
The products derived from
animals for human consumption such as meat and milk should be free from any
contaminants or residue effect resultant on the use of feed stuffs containing
additives produced by biotechnological processes.
Figure 1: Importation and inter state shipment of human pathogens and
related materials
Fig.1.3:
Specify the colour and size of the lable which shall be affixed to all
etiologic agents. Informating on
any provisions of this regulatory requirements may be obtained from
Institutional Biosafety Committee (IBSC)



For implementation of the
guidelines it is necessary to have an institutional mechanism to ensure the
compliance of requisite safeguards at various levels. The guidelines prescribe
specific actions that include establishing safety procedures for rDNA research,
production and release to the environment and setting up containment conditions
for certain experiments. The guidelines suggest compliance of the safeguards
through voluntary as well as regulatory approach. In this connection, it is
proposed to have a mechanism of advisory and regulatory bodies to deal with the
specific and discretionary actions on the following:
a.
Self
regulation and control in the form of guidelines on recombinant research
activities; and
b.
Regulation
of large scale use of engineered organisms in production activity and release
of organisms in environmental applications under statutory provisions.
The institutional mechanism
as proposed for implementation of guidelines is shown in organogram in Figure
2. Mainly it consists of the following:-
i)
Recombinant
DNA Advisory Committee (RDAC)
ii)
Institutional
Biosafety Committee (IBSC)
iii)
Review
Committee on Genetic Manipulation (RCGM)
iv)
Genetic
Engineering Approval Committee (GEAC)
1. Recombinant DNA Advisory Committee
(RDAC): The Committee should take note of
developments at national and international levels in Biotechnology towards the
currentness of the safety regulation for India on recombinant research use and
applications. It would meet once in 6 months or sooner for this purpose.
The specific terms of reference for Recombinant Advisory Committee
include the following :
i)
To
evolve long term policy for research and development in Recombinant DNA
research.
ii)
To
formulate the safety guidelines for Recombinant DNA Research to be followed in
India.
iii)
To
recommended type of training programme for technicians and research fellows for
making them adequately aware of hazards and risks involved in recombinant DNA
research and methods of avoiding it.
2.
Implementation Committees:
2.1
Institutional Biosafety Committee
(IBSC)
Institutional Biosafety
Committee (IBSC) are to be constituted in all centres engaged in genetic
engineering research and production activities. The Committee will constitute
the following:
(i)
Head
of the Institution or nominee
(ii)
3
or more scientists engaged in DNA work or molecular biology with an outside
expert in the relevant discipline.
(iii)
A
member with medical qualifications - Biosafety Officer (in case of work with
pathogenic agents/large scale use).
(iv)
One
member nominated by DBT.
2.2 The Institutional Biosafety Committee
shall be the nodal point for interaction within institution for implementation
of the guidelines. Any research project which is likely to have biohazard
potential (as envisaged by the guidelines) during the execution stage or which
involve the production of either microorganisms or biologically active
molecules that might cause bio-hazard should be notified to IBSC. IBSC will
allow genetic engineering activity on classified organisms only at places where
such work should be performed as per guidelines. Provision of suitable safe
storage facility of donor, vectors, recipients and other materials involved in
experimental work should be made and may be subjected to inspection on
accountability.
The biosafety functions and
activity include the following:
i)
Registration
of Bio-safety Committee membership composition with RCGM and submission of
reports.
IBSC will provide half
yearly report on the ongoing projects to RCGM regarding the observance of the
safety guidelines on accidents, risks and on deviations if any. A computerised
Central Registry for collation of periodic report on approved projects will be
set up with RCGM to monitor compliance on safeguards as stipulated in the
guidelines.
ii)
Review
and clearance of project proposals falling under restricted category that meets
the requirements under the guidelines.
IBSC would make efforts to
issue clearance quickly on receiving the research proposals from investigators.
iii)
Tailoring
biosafety programme to the level of risk assessment.
iv)
Training
of personnel on biosafety.
v)
Instituting
health monitoring programme for laboratory personnel.
Complete medical check-up of
personnel working in projects involving work with potentially dangerous
microorganisms should be done prior to starting such projects. Follow up
medical checkups including pathological tests should be done periodically, at
least annually for scientific workers involved in such projects. Their medical
records should be accessible to the RCGM. It will provide half yearly reports
on the ongoing projects to RCGM regarding the observance of the safety
guidelines on accidents, risks and on deviations if any.
vi)
Adopting
emergency plans.
3. Review
Committee on Genetic Manipulation (RCGM): The RCGM will have the following
composition:
i)
Department
of Biotechnology
ii)
Indian
Council of Medical Research
iii)
Indian
Council of Agricultural Research
iv)
Council
of Scientific & Industrial Research
v)
Three
Experts in Individual capacity
vi)
Department
of Science & Technology
The RCGM
will have the functions:
i)
To
establish procedural guidance manual - procedure for regulatory process with
respect to activity involving genetically engineered organisms in research,
production and applications related to environmental safety.
ii)
To
review the reports in all approved ongoing research projects involving high
risk category and controlled field experiments, to ensure that safeguards are
maintained as per guidelines.
iii)
To
recommended the type of containment facility and the special containment
conditions to be followed for experimental trials and for certain experiments.
iv)
To
advise customs authorities on import of biologically active material,
genetically engineered substances or products and on excisable items to Central
Revenue and Excise.
v)
To
assist Department of Industrial Development, Banks towards clearance of
applications in setting up industries based on genetically engineered
organisms.
vi)
To
assist the Bureau of Indian Standards to evolve standards for biologics
produced by rDNA technology.
vii)
To
advise on intellectual property rights with respect to rDNA technology on
patents.
3.1 The RCGM would have a Research
Monitoring function by a group consisting of a smaller number of individuals (3
or 4). The monitoring group would be empowered to visit experimental facilities
in any laboratory in India where experiments with biohazard potential are being
pursued in order to determine the Good Laboratory practice and conditions of
safety are observed.
3.2 In addition, if the RCGM has reasons
to believe that there is either actual or potential danger involved in the work
carried out by any laboratory (which might or might not have obtained prior
clearance for the project), the monitoring group would be empowered to inspect
the facility and assess the cause of any real or potential hazard to make
appropriate recommendation to the RCGM. RCGM would be empowered to recommend
alteration of the course of experiments based on hazard considerations or take
steps to cancel the project grant, in case of deliberate negligence and to
recommend appropriate actions under the provisions of Environmental Protection
Act (EPA) where necessary.
4. Genetic Engineering Approval Committee (GEAC): Genetic Engineering Approval
Committee (GEAC) will function under the Department of Environment (DOEn) as
statutory body for review and approval of activities involving large scale use
of genetically engineered organisms and their products in research and
development, industrial production, environmental release and field
applications.
The functions include giving
approval from environmental angle on:
i)
Import,
export, transport, manufacture, process, selling of any microorganisms or
genetically engineered substances or cells including food stuffs and additives
that contains products derived by Gene Therapy.
ii)
Discharge
of Genetically engineered/classified organisms/cells from Laboratory, hospitals
and related areas into environment.
iii)
Large
scale use of genetically engineered organisms/classified microorganisms in
industrial production and applications. (Production shall not be commenced
without approval).
iv)
Deliberate
release of genetically engineered organisms. The approval will be for a period
of 4 years.
The composition of the
Committee would be as follows:
1.
Chairman
- Additional Secretary, Department of Environment
Co-Chairman - Expert Nominee
of Secretary, DBT.
2.
Representatives
of concerned Agencies and Departments:
·
Ministry
of Industrial Development
·
Department
of Science & Technology
·
Department
of Ocean Development
·
Department
of Biotechnology
3. Expert Members:
·
Director-General,
Indian Council of Agricultural Research
·
Director
General, Indian Council of Medical Research
·
Director-General,
Council of Scientific & Industrial Research
·
Director-General,
Health Services (Ministry of Health & Family Welfare)
·
Plant
Protection Adviser (Ministry of Agriculture)
·
Chairman,
Central Pollution Control Board
·
3
Outside experts in individual capacity.
4. Member Secretary - Official of, DOEn
4.1 GEAC will have the Biotechnology
Coordination Committees under it which will functions as legal and statutory
body with judicial powers to inspect, investigate and take punitive action in
case of violations of statutory provisions under EPA.
i)
Review
and control of safety measures adopted while handling large scale use of
genetically engineered organisms/classified organisms in research,
developmental and industrial production activities.
ii)
Monitoring
of large scale release of engineered organisms/products into environment,
oversee field applications and experimental field trials.
iii)
To
provide information/data inputs to RCGM upon surveillance of approved projects
under industrial production, and in case of environmental releases with respect
to safety, risks and accidents.
4.2 Statutory rules and regulations to be
operated by the GEAC would be laid down under the Environment Protection Act,
1986.
5.
Funding Agency
5.1 The funding agency will be responsible
for approval and clearing of research proposals for grants in aid in respect of
rDNA research activities. The funding agency at the centre and state level will
be advised to ensure that the guidelines are taken into account for compliance
while supporting grants on research projects. Investigators will be required to
submit as part of the project application an evaluation of biohazards that may
arise and also the requirement on the type of containment facility, certified
by IBSC. The funding agency should state clearly that support on approved
projects will be withdrawn in case of deliberate violation or avoidable
negligence of the rDNA guidelines. The investigators will also be asked to make
a declaration in their publications that the work was carried out following the
national guidelines. The funding agency will annually submit to RCGM the list
of approved projects that come under high risk categories.
5.2 The concerned institutions will be
instructed to the effect that initiation and execution of any research project,
production activity and field trials should be preceded by necessary procedures
of notification and approval of the competent authority including IBSC, GEAC
depending on the nature of projects and activities.
6. Initially, to familiarize the
R&D groups in industry and other institutions the guidelines will be widely
publicised through scientific journals and popular science magazines. Workshops
and group discussions will be organised in R&D institutes, and other places
to fulfill the need for public information on safety aspects of rDNA
technology. Steps will be taken to introduce courses in biohazards and safety
procedures for personnel working in areas which are likely to involve
biohazards as part of the training programme.
|

A.
The Basic Laboratory: The basic laboratory encompasses all laboratories
working with Risk Group I and Risk Group II agents-those that present low or
moderate risk to the laboratory worker and low or limited risk to the
community. In some instances, particularly in clinical laboratories of
hospitals, exposure to agents of high individual risk may occasionally or
unexpectedly occur in the course of routine work. These possibilities must be
recognised in developing safety plans and policies.
The basic laboratory
guidelines presented here are comprehensive and detailed as they are
fundamental to all classes of laboratory. The guidelines for containment
laboratories that follow later are modifications of the basic guidelines
designed for work with the more dangerous pathogens.
Code of
practice: This
code is a listing of the most essential laboratory procedures that are basic to
safe laboratory practice. In many laboratories and national laboratory
programmes, such a code may be given the status of "rules" for
laboratory operations. In these guidelines various parts of the "code of
practice" will be elaborated and explained.
It is emphasised that good laboratory practice is
fundamental to laboratory safety and cannot be replaced by specialised
equipment, which can only supplement it.
The most important rules are listed below, not
necessarily in order of importance :
1.
Mouth
pipetting should be prohibited.
2.
Eating,
drinking, smoking, storing food, and applying cosmetics should not be permitted
in the laboratory work area.
3.
The
laboratory should be kept neat, clean and free of materials not pertinent to
the work.
4.
Work
surfaces should be decontaminated at least once a day and after any spill of
potentially dangerous material.
5.
Members
of the staff should wash their hands after handling infectious materials and
animals and when leaving the laboratory.
6.
All
technical procedures should be performed in a way that minimizes the creation
of aerosols.
7.
All
contaminated liquid or solid materials should be decontaminated before disposal
or reuse; contaminated materials that are to be autoclaved or incinerated at a
site away from the laboratory should be placed in durable leakproof containers,
which are closed before being removed from the laboratory.
8.
Laboratory
coats, gowns, or uniforms should be worn in the laboratory; laboratory clothing
should not be worn in non laboratory areas; contaminated clothing should be
disinfected by appropriate means.
9.
Safety
glasses, face shields, or other protective devices should be worn when
necessary to protect the eyes and face from splashes and impacting objects.
* Laboratory Biosafety Manual (Geneva) World
Health Organisation, (1983)
10.
Only
persons who have been advised of the potential hazards and meet any specific
entry requirements (e.g. immunization) should be allowed to enter the
laboratory working areas; laboratory doors would be kept closed when work is in
progress; access to animal houses should be restricted to authorized persons;
children are not permitted in laboratory working areas.
11.
There
should be an insect and rodent control programme.
12.
Animals
not involved in the work being performed should not be permitted in the
laboratory.
13.
The
use of hypodermic needles and syringes should be restricted to parenteral
injection and aspiration of fluids from laboratory animals and diaphragm
vaccine bottles. * Laboratory Biosafety Manual (Geneva) World Health
Organisation, (1983) Hypodermic needles and syringes should not be used as a
substitute for automatic pipetting devices in the manipulation of infectious
fluids. Cannulas should be used instead of sharp needles wherever possible.
14.
Gloves
should be worn for all procedures that may involve accidental direct contact
with blood, infectious materials, or infected animals. Gloves should be removed
aseptically and autoclaved with other laboratory wastes before disposal. When
disposable gloves are not available, re-usable gloves should be used. Upon
removal they should be cleaned and disinfected before re-use.
15.
All
spills, accidents and overt or potential exposures to infectious materials
should be reported immediately to the laboratory supervisor. A written record
should be prepared and maintained. Appropriate medical evaluation,
surveillance, and treatment should be provided.
16.
Baseline
serum samples may be collected from and stored for all laboratory and other at
risk personnel. Additional serum specimens may be collected periodically
depending on the agents handled or the function of the facility.
17.
The
laboratory supervisor should ensure that training in laboratory safety is provided.
A safety or operations manual that identifies known and potential hazards and
that specifies practices and procedures to minimise or eliminate such risks
should be adopted. Personnel should be advised of special hazards and required
to read and follow standard practices and procedures.
Laboratory
design and facilities: In designing a laboratory and assigning certain types of work to a
laboratory, special attention should be paid to conditions that are known to
pose problems. These include :
·
creation
of aerosols;
·
work
with large volumes and/or high concentration of microorganisms;
·
overcrowded,
overequipped laboratories;
·
infestation
with rodents or insects;
·
unauthorised
entrance.
Design
features for basic laboratories:
1.
Ample
space must be provided for the safe conduct of laboratory procedures.
2.
Walls,
ceiling, and floors should be smooth, easily cleanable, impermeable to liquids,
and resistant to the chemicals and disinfectants normally used in the
laboratory. Floors should be slip resistant. Exposed pipes and ducting should
stand clear of walls. (Horizontal runs should be avoided to prevent dust
collection.)
3.
Adequate
illumination should be ensured for carrying out all activities. Undesirable
reflection is to be avoided.
4.
Bench
tops should be impervious to water and resistant to disinfectants, acids,
alkalis, organic solvents, and moderate heat.
5.
Laboratory
furniture should be sturdy, and open spaces between and under benches,
cabinets, and equipment should be accessible for cleaning.
6.
Storage
space must be adequate to hold supplies for immediate use and thus prevent
clutter on bench tops and in the aisles. Additional long-term storage space,
conveniently located outside and working areas, should also be provided.
7.
Wash-basins,
with running water if possible, should be provided in each laboratory room,
preferably near the exit.
8.
Doors
should have appropriate fire ratings, be self-closing, and have vision panels.
9.
An
autoclave (or a suitable substitute) for decontamination of infectious
laboratory wastes should be available in the same building as the laboratory.
10.
Facilities
for storing outer garments and personal items and for eating, drinking and
smoking should be provided outside the working areas.
11.
There
are no specific ventilation requirements. In planning new facilities,
consideration should be given for providing a mechanical ventilation system
that provides an inward air flow and exhaust without recirculation. If there is
no mechanical ventilation, windows should be openable, preferably having
flyproof screens. Skylights should be avoided.
12.
Space
and facilities should be provided for the safe handling and storage of
solvents, radioactive materials, and compressed gases.
13.
Safety
systems should cover fire, electrical emergencies, emergency shower, and
eyewash facilities.
14.
First-aid
areas or rooms suitably equipped and readily accessible should be available.
15.
A
good-quality and dependable water supply is essential. There should be no
cross-connections between sources for laboratory purposes and the drinking
water supply. The public water system must be protected by a back-flow
preventer.
16.
A
reliable electricity supply with adequate capacity should be available. There
should be emergency lighting to permit safe exit. A standby generator with
automatic cut-off is desirable for the support of essential
equipment-incubators, freezers, etc. In particular, it is in-dispensible for
the ventilation of animal cages.
17.
A
reliable supply of town, natural or bottled gas to each working area is
essential. Good maintenance of the installation is mandatory.
18.
Three
aspects of waste disposal need special attention to meet performance and/or
pollution control requirements:
·
autoclaves
and sterilizers for treatment of solid wastes need specially designed
accommodation and services;
·
wastewater
and sewage discharged from laboratories may have to be pretreated;
·
incinerators
may need to be of special design and equipped with after burners and
smoke-consuming devices.
19.
Laboratories
and their animal houses are occasionally the targets of vandals. Security may
be augmented by strong doors, screened windows, and restricted issue of keys.
Laboratory
equipment: The
risk of an infection can be minimized by the use of safety laboratory
equipment, practices and facilities. This section deals primarily with
laboratory equipment suitable for work with Risk Group II (and also Risk Group
III) agents.
The head of the laboratory, after consultation with
the safety officer and safety committee, should ensure that adequate equipment
is provided and that it is used properly. In selecting safe laboratory
equipment, the general principles that should be considered include:
·
designed
to limit or prevent contact between the operators and the infectious agent;
·
constructed
of materials that are impermeable to liquids, corrosion-resistant, and meet
structural strength requirement;
·
fabricated
to be free of burrs and shard edges;
·
designed,
constructed and installed to facilitate simple operation and to provide for
ease of maintenance, accessibility for cleaning, and ease of decontamination
and certification testing.
These are general principles. Detailed performance
and construction specifications may be required to ensure that the equipment
purchased will possess the necessary safety features.
1.
Pipetting
aids-to replace mouth pipetting. These are available in many designs.
2.
Biologicals
safety cabinets-to be used whenever:
·
Procedures
with a high potential for creating hazardous aerosols are conducted. These may
include centrifugation, grinding, blending, vigorous shaking or mixing, sonic
disruption, opening containers of infectious materials whose internal pressure
may be different from the ambient pressure, intranasal inoculation of animals,
and harvesting infected tissues from animals or eggs.
·
High
concentrations or large volumes of infectious agents are handled. Such
materials may be centrifuged in the open laboratory if sealed heads or
centrifuge safety cups are used and if they are opened only in a biological
safety cabinet.
3.
Loop
microincinerators - to reduce aerosol production.
4.
Screw-cap
tubes and bottles - to provide positive specimen containment.
5.
Autoclaves
- to sterilize contaminated material.
Health and
medical surveillance: The objectives of the health and medical surveillance of laboratory
personnel are:
·
to
provide a means of preventing occupationally acquired disease by the exclusion
of highly susceptible individuals as well as by regularly reviewing those
accepted for employment;
·
to
provide a means for the early detection of laboratory-acquired infection;
·
to
access the efficacy of protective equipment and procedures.
It is the responsibility of the employing authority
through the laboratory director to ensure that health and medical surveillance
of laboratory personnel is carried out.
Guidelines for
the surveillance of workers handling microorganisms of Risk Group I:
These microorganisms are unlikely to cause human
disease or animal disease of veterinary importance. Ideally, however, staff
members should be subjected to a pre-employment health surveillance procedure
regarding past medical history. Prompt reporting of illness or laboratory
accident is desirable and all staff members should be made aware of the
importance of maintaining good laboratory safety practice.
Guidelines for
the surveillance of workers handling microorganisms of Risk Group II:
1.
Pre-employment
of preplacement health surveillance is necessary. This screening should include
the past medical history. A clinical examination and the collection of a
baseline serum sample would be advantageous and, in some cases, may be
necessary.
2.
The
laboratory should maintain an up-to-date list of the employees' family medical
practitioners.
3.
Records
of illness and absence should be kept by the laboratory director and it is the
responsibility of the laboratory worker and his own medical adviser to keep the
director informed of all absences due to illness.
4.
Women
of child-bearing age should be made aware, in unequivocal terms, of the risks
to the unborn child of occupational exposures to microbiological agents, such
as rubella and cytomegalovirus. The precise steps taken to protect the foetus
will vary, depending on the microorganisms to which exposure may occur.
Training: Human error and poor
laboratory practice can compromise the best of laboratory safeguards and
equipment provided specifically to protect the laboratory worker. Thus, a
safety-conscious staff, well informed about the recognition and control of
hazards present in the laboratory, is the key element in the prevention of
laboratory accidents and acquired infections. For this reason, continuous
on-the-job training in safety measures in essential. The process begins and
procedures are integrated into the employee's basic training. Safety measures
should always be an integral part of a new employee's introduction to the
laboratory.
Laboratory supervisors must play the key role in
training their immediate staff in good laboratory practice. The safety officer
can assist in training and with the development of training aids and
publications.
Staff training should always include safe methods in
dealing with the following hazardous procedures commonly encountered by all
laboratory personnel:
·
procedures
involving inhalation risks (i.e. aerosol production)-streaking agar plates,
pipetting, centrifuging, flaming loops, opening cultures;
·
procedures
involving ingestion risks-handling specimens, smears and cultures;
·
procedures
involving disposal of infectious material.
Handling, transfer and shipment of specimens: The handling, transfer and
shipment of improperly packed specimens and infectious agents carries a risk of
infection to all people directly engaged in, or in contact with, any part of
the process. Improper handling within the laboratory endangers not only the
immediate staff but also administrative, secretarial and other support
personnel. Transfer of materials between laboratories or institutions widens
the scope of risk to the public and to airline and postal personnel.
Specimens containers. Specimens containers should be leakproof. No
material should remain on the outside after the cap has been closed.
Transport. To avoid accidental leakage or spillage into the environment special
secondary containers should be provided for the transport of specimens between
wards or departments and laboratories. These should be of metal or plastic.
Reception of specimens. Where large numbers of specimens are received a
separate room should be provided for their receipt. In a small facility, this may
be part of the laboratory room.
Opening of packages. Ideally, all packages received via mail or airfreight or other common
carrier should be opened in a biological safety cabinet.
Definitions. The definitions adopted for application as from 1983 are as follows:
·
"Infectious
Substances are defined as substances containing viable microorganisms or their
toxins which are known, or suspected, to cause disease in animals or
humans."
·
"Diagnostic
Specimens are any human or animal material including, but not limited to,
excreta, secreta, blood and its components, tissue and tissue fluids, being
shipped for purpose of diagnosis, but excluding live infected animals."
·
"Biological
Products are either finished biological products for human or veterinary use
manufactured in accordance with the requirements of national public health
authorities and moving under special approval or license from such authorities;
or finished biological products shipped prior to licensing for development or
investigational purposes for use in humans or animals, or products for
experimental treatment of animals, and which are manufactured in compliance with
the requirements of national public health authorities. They may also cover
unfinished biological products prepared in accordance with procedures of
specialised government agencies. Live animal and human vaccines may be subject
to authorization by the country of destination."
Packaging requirements. Packaging of infectious substances and diagnostic
specimens is in three layers: (a) a primary watertight receptacle containing
the specimen; (b) a secondary watertight receptacle enclosing enough absorptive
material between it and the primary receptacle to absorb all of the fluid in
the specimen in case of leakage; and (c) an outer package which is intended to
protect the secondary package from outside influence such as physical damage
and water, while in transit (Figure 1). It is important to tape securely on the
outside of the secondary container one copy of the specimen data forms, letters
and other information that identifies or describes the specimen. (Another copy
should be sent by airmail to the receiving laboratory and a third copy retained
by the sender). In this manner, the receiving laboratory can identify the
specimen and make the decision regarding safe internal handling and
examination.
Fig.
1

Infectious substances are
classified as dangerous goods. Packages containing such substances must bear
the infectious substance (biohazard) label (see Fig. 2).
The IATA Shipper's
Declaration for Dangerous Goods must also be completed for shipment by either
airfreight or airmail.
The Universal Postal Union
(UPU) requires that containers for international shipment of noninfectious
diagnostic specimens and other biologicals materials bear the standard
international violet-coloured "matieres biologiques perissables"
(perishable biological substances) label (see. Fig.3).
·
See
Part II: E. "Safe shipment of specimens and infectious substances",
for additional information, including emergency actions to be followed in the
event of a transport accident involving the shipment or transfer of
microorganisms


Fig. 2 Fig.
3
Emergency
procedures: Emergency
contingency plans should be prepared for each individual laboratory as well as
for the institutions. These are best prepared by the individual laboratory
supervisor in conjunction with his staff and the safety officer. This procedure
offers the best prospect of success as it is the immediate staff who are most
familiar with the hazards associated with the particular laboratory.
Once the emergency plan is formulated, it should be
pasted in conspicuous place in the laboratory for immediate reference.
Emergency plans should provide for:
(a)
breakage
and spillage,
(b)
accidental
injection, cuts and abrasions,
(c)
accidental
ingestion of potentially hazardous material,
(d)
a
potentially hazardous aerosol release (other than in a safety cabinet),
(e)
breakage
of tubes in centrifuges not having safety cups,
(f)
fire,
flood and natural disaster,
(g)
vandalism,
(h)
emergency
services-whom to contact,
(i)
emergency
equipment and its location.
(j)
Refer
to Part II : F. "Contingency plans and emergency procedures", for
further information.
Decontamination and disposal
in laboratories are closely interrelated acts, since disinfection or
sterilization constitute the first phase of disposal. All materials and
equipment will ultimately be disposed of; however, in the terms of daily use,
only a portion of these will require actual removal from the laboratory or
destruction. The remainder will be recycled for use within the laboratory,
examples being re-usable laboratory glassware, instruments and laboratory
clothing. Disposal should therefore be interpreted in the broad sense rather
than in the restrictive sense of a destructive process.
The principal questions to
be answered prior to disposal of any objects or materials from laboratories
dealing with potentially infectious microorganisms or animal tissues are:
·
Have
the objects or materials been effectively disinfected or sterilised by an
approved procedure?
·
If
not, have the objects or materials been packaged in an approved manner for
immediate on-site incineration or transfer to another laboratory?
·
Does
disposal of the disinfected or sterilized objects or materials involve any
additional potential hazard, biological or otherwise, to those carrying out the
immediate procedure or those who might come into contact with the objects or
materials outside the laboratory complex?
Autoclaving is the procedure
of choice for all decontamination processes. The autoclave should be of the
gravity displacement type and worked upon at 1.4 kg/cm2 pressure for
30 minutes.
Alternate methods, if an
autoclave is not available include:
·
boiling
for 30 minutes, preferably in water containing sodium bicarbonate,
·
use
of a pressure cooker at the highest attainable working pressure.
There should be a written
disinfectant policy stating which disinfectants are used for what purpose and
the use-dilution of each.
Sodium hypochlorite and
formaldehyde are the disinfectants recommended for general laboratory use.
For special purposes
phenolic compounds, various surface-active and/or lipid-destroying agents,
including alcohols, iodine and iodophors and other oxidising agents, as well as
very high or extremely low pH, can be effective provided that it has been
established that the agent to be destroyed is not resistant to the procedure.
The use of dry heat is
discouraged because of its unpredictable variations. Similarly, ultraviolet
irradiation is unsuitable.
·
See
Part II : G. "Disinfection and sterilisation", for further
information
An identification and separation system for
contaminated materials (and their containers) should be established. Categories
may be :
(a)
non-contaminated
waste that can be disposed of with general waste,
(b)
"sharps"-needles,
syringes, etc.,
(c)
contaminated
material for autoclaving and recycling,
(d)
contaminated
material for disposal.
Hypodermic needles should be placed in containers
with walls that are not readily penetrable. When full, these should be placed
in contaminated waste containers and incinerated, even if laboratory practice
requires that they are autoclaved first.
Disposable syringes, placed in container, should be
incinerated, even if they are autoclaved first.
The material is placed in shallow leakproof
containers containing enough of a suitable disinfectant to cover the contents.
The containers are then placed in the autoclave. No precleaning is performed;
any necessary cleaning or repair is done after autoclaving.
All cultures and contaminated material are normally
autoclaved in leakproof containers prior to disposal. Following autoclaving the
material may be placed in transfer containers for transport to the incinerator
or other point of disposal.
In some situations, the autoclaving step is not
required. In such instances the contaminated waste is placed in specially
marked containers and transported directly to an incinerator. The best practice
is to place a plastic bag for containing the waste in a paperboard box; then
contents and container can all be incinerated. If transfer containers are used
they should be cleaned and disinfected after emptying the contaminated waste
and prior to return to the laboratory. Such containers should be leakproof with
tight-fitting covers.
Incineration is the method of choice for final
disposal of contaminated waste, including carcasses of laboratory animals.
Incineration for this purpose must meet with the approval of public health and
air pollution authorities and the safety officer.
Where incinerators are not approved for such use,
final disposal methods must be established in cooperation with public health
authorities.
Animal facilities:
The use of
laboratory animals for experimental and diagnostic purposes imposes on the user
the obligation to take every care to avoid causing the animals unnecessary pain
or suffering. They must be provided with comfortable, hygienic housing and adequate,
wholesome food and water. At the end of the experiment they should be destroyed
in a humane, painless manner.
Only healthy persons should enter the animal houses.
Qualified well trained animal house officers must be available.
The animal house or room should be an independent,
detached unit. If it adjoins the laboratory facilities, the design should
provide for its isolation from the public laboratory should such need arise.
The design and layout of the unit will vary greatly
depending upon the species of animals to be accommodated, upon the nature of
the work programme, and upon local climatic conditions. Individual rooms are
required to separate animals according to the degree of hazard of the agents
under investigation. Additional design requirements may be obtained from
publications devoted to laboratory animal care.
The following safety precautions apply to the
management of all facilities :
1.
A
change of footwear and outer clothing should be made when entering or leaving
an animal unit.
2.
Appropriate
protective clothing and gloves should be worn when necessary.
3.
Entry
of wild rodents and other animals and insects must be prevented. They may carry
agents pathogenic to man without themselves exhibiting any symptoms. Any such
intrusion should be reported.
4.
Small
laboratory rodents or other animals that escape from their cages should be
killed when captured and their carcasses incinerated.
5.
Unexpected
illness or deaths among animals should be reported without delay. Animals
suffering from unexpected illness should not be touched until instructions are
given by the head of the laboratory or other responsible officer.
6.
The
hands should be washed-thoroughly after dead or live animals have been handled.
7.
Small
wounds, however trivial, incurred while handling animals, must be treated
immediately; bleeding should be encouraged, followed by liberal washing in soap
and water; a protective first aid dressing should be applied and treatment
sought as soon as possible. This applies especially if wounds are caused by
animals.
8.
All
staff working in animals facilities should be immunized against tetanus and
against other agents when indicated and available.
9.
Excretion
of agents in saliva, faeces and urine will contaminate the animal box and
bedding. The danger of aerosol contamination is increased when soiled bedding
is disturbed.
10.
Inoculations
and post-mortem examinations involving dangerous pathogens should be conducted
in a microbiological safety cabinet.
11.
Cages
that have been used for work with pathogens should be autoclaved before they
are cleaned.
12.
All
laboratory animals can be symptomless carriers of microorganisms highly
dangerous to man.
13.
Special
precautions should be taken with drugs used for the sedation or euthanasia of
experimental animals. At least one of the assistants should be aware of the
emergency procedures in the event of accidental self-injection by the operator.
14.
Volatile
anaesthetic may affect staff in a confined space or may be explosive.
Chemical,
electrical, fire, and radiation safety: A breakdown in the containment of pathogenic
organisms may result indirectly through fire or chemical, electrical, or
radiation accidents. It is therefore mandatory to maintain high standards of
chemical, electrical, fire, and radiation safety in the microbiology
laboratory.
Statutory rules and regulations for each of these
will normally be laid down by the competent national or local authorities.
Their assistance and guidance should be sought if
necessary. A preliminary assessment of the status of the laboratory in respect
to these hazards can be made by using the safety check list give in Part II: H.
"General safety checklist". *
B. The Containment
Laboratory: The containment laboratory is
designed and provided for work with Risk Group III agents-those that present a
high risk to laboratory workers but a low risk to the community.
This level of containment
requires strengthening of the basic laboratory operational and safety
programmes as well as the provision of added structural safeguards and the
mandatory use of biological safety cabinets.
The guidelines are presented
in the form of modifications in the guidelines for the basic laboratory.
Therefore, the reader must first apply the basic laboratory guidelines before
those specific of containment laboratories. The major changes are in:
·
Code
of practice
·
Laboratory
design and facilities
·
Health
and medical surveillance
Laboratories in this
category should be registered or listed with the national or other appropriate
health authority.
Code of
practice: The
code of practice for a basic laboratory applies except where modified as
follows:
1.
The
two-person rule should apply, whereby no individual works alone within the
laboratory.
2.
A
hazard warning sign should be displayed on laboratory doors, identifying the
agent, the name of the laboratory supervisor and other responsible person(s)
and indicating any special conditions of entry into the area (immunizations,
etc.) (see. Fig.4).
3.
Laboratory
clothing that protects street clothing (i.e. solid front or wrap-around gowns,
scrub suits, coveralls, etc.) must be worn in the laboratory. Front-button
laboratory coats are unsuitable. Laboratory clothing must not be worn outside
the laboratory and must be decontaminated before being laundered.
4.
When
appropriate, respiratory protective equipment should be worn in rooms
containing infected animals.
Fig. 4: Hazard warning sign for laboratory doors
ADMITTANCE TO AUTHORIZED PERSONNEL ONLY
Hazard identity: ____________________________________________________________________________
Responsbile investigator:
_____________________________________________________________________
In case of emergency cell:
____________________________________________________________________
Daytime phone:_________________________________________
Home phone:________________________
Authorization for entrance
must be obtained from the Responsible
Investigator named above
Laboratory
design and facilities: The containment laboratory is designed for work with Risk Group III
agents and with large volumes and high concentrations of Risk Group II agents,
where there is a high risk of aerosol spread or infection.
The section on design and facilities for a basic
laboratory applies, except where modified below :
1.
The
laboratory should be separated from areas that are open to unrestricted traffic
flow within the building. Additional separation may be achieved by using a
laboratory at the blind end of a corridor, a partition and door, a double-door
system where entry to the laboratory should be through an ante-room or airlock.
2.
Access
to the laboratory area should be designed to prevent entrance of free-living
arthopods and other vermin.
3.
The
surfaces of walls, floors, and ceilings should be water resistant and easy to clean.
Openings in these surfaces should be sealed to facilitate decontaminating the
area.
4.
A
foot or elbow-operated wash-hand basin should be provided near each laboratory
exit door.
5.
Windows
in the laboratory should be closed and sealed.
6.
Access
doors to the laboratory should be self-closing and lockable.
7.
An
autoclave for decontamination of laboratory wastes should be available within
the laboratory. If infectious wastes have to be removed to another area in the
same building for disinfection, they should held and transported in a covered,
leakproof container.
8.
There
should be a ventilation system that establishes a negative pressure into the
laboratory so that there is a directional air flow from the corridor or the
basic laboratory to the working area of the containment laboratory. Personnel
must verify that proper direction air flow (into the laboratory) is achieved.
9.
The
building exhaust system can be used for this purpose if the exhaust air is not
recirculated to other areas of the building. air within the laboratory can,
however, be recirculated.
10.
The
exhaust air from the laboratory should be discharged directly to the outside or
through the building exhaust system so that it is dispersed away from occupied
building and air intakes. The exhaust air from the laboratory that does not
come from the biological safety cabinet can be discharged to the outside
without being filtered.
11.
In
laboratories that have supply air systems, the supply air and exhaust air
systems are interlocked to ensure inward air flow at all times.
12.
The
HEPA-filtered exhaust air from Class I and Class II biological safety cabinets
should be discharged directly to the outside or through the building exhaust
system. (HEPA:high efficiency particulate air).
13.
If
the HEPA-filtered exhaust air from Class I or II biological safety cabinets is
to be discharged to the outside through a building exhaust air system, it
should be connected to this system in such a way as to avoid any interference
with the air balance of the cabinet or building exhaust systems.
14.
Air
may be recirculated within the laboratory only after it has been filtered
through tested and certified cabinet exhaust HEPA filters.
15.
Exhaust
air from Class III biological safety cabinets must be discharged directly to
the outside without being recirculated through the laboratory.
Laboratory
equipment: The
principles for the selection of equipment, including biological safety
cabinets, are the same as the basic laboratory except that all activities
involving infectious materials are conducted in biological safety cabinets,
with other physical containment devices, or using special personal protective
equipment. The use of a Class III biological safety cabinets or a flexible-firm
isolator may be indicated for procedures with Risk Group III microorganisms.
Health and
medical surveillance: The objective of health and medical surveillance programmes for basic
laboratories apply to containment laboratories, except where modified as
follows:
1.
Medical
examination of all laboratory personnel working in the containment laboratory
is mandatory. This examination should include a detailed past medical history
and clinical examination.
2.
A
baseline serum sample should be obtained and stored for future reference.
3.
Employees
being treated with immunosuppressive drugs should not be employed in
containment laboratories.
Following a satisfactory clinical assessment report,
the examinee should be provided with the medical contact card (see Fig.5)
stating that he/she is employed in a containment laboratory. It is suggested that
this card should be wallet sized and it should always be carried by the holder.
NOTE: The contact persons to be
entered on the front of the card would need to be agreed locally but might
include the laboratory director, the medical adviser, or the biosafety officer.
Fig. 5. Medical contact card format
Front of card
THE CARD HOLDERS ……………… (Name of card holder) IS EMPLOYED AT ……………………(laboratory name. Address and numbers) In the event of illness. The possibility of laboratory required infection should be
considered. You are asked to
contact as soon as possible one of the following: 1.
……. (Name and telephone number) 2.
……. (Name and telephone number) Date of
Issue …………….
Back of card
ALWAYS
CARRY THIS CARD WITH YOU. ALWAYS
SHOW IT TO AN ATTENDING PHYSICIAN
C. The Maximum Containment
Laboratory: The maximum containment
laboratory is designed for work with infectious agents or experiments in
microbiology that present, or are suspected to present, a high risk to both the
laboratory worker and the community.
Construction and operation
of a maximum containment laboratory should be preceded by intensive
consultations with institutions that have experience operating a maximum
containment laboratory.
Operational maximum
containment laboratories should be under the control of national or other
appropriate health authorities.
The principal features of a
maximum containment laboratory are :
1.
Controlled access. Entry and exit of
personnel and supplies are through airlock systems. On entering, personnel put
on a complete change of clothes and they shower on exit before putting on their
street clothing.
2.
Controlled air system. Negative pressure is
maintained by an individual supply and exhaust air mechanical ventilation
system with HEPA filters in the exhaust (and in the intake when necessary).
3.
Decontamination of effluents. All effluents from the
maximum containment laboratory are to be rendered safe, including the shower
water.
4.
Sterilization of waste and
materials.
A double-door pass through autoclave is provided.
5.
Primary containment. An efficient primary
containment will consist of one or more of the following:
a. Class III biological safety cabinet
b. flexible-film isolators to similar standards and
c. a positive-pressure ventilated suit as worn
in a "suit" laboratory. In this case, a special decontamination
shower must be provided for personnel leaving the suit area.
Because of the great
complexity of the work a detailed work manual should be developed and tried out
in training runs.
In addition, an effective
emergency programme must be devised (see also Part II:F."Contingency plans
and emergency procedures")*. In the preparation of this programme active
cooperation with national and local health authorities should be established.
Other emergency services, e.g. fire, police, receiving hospitals, should
likewise be involved.
D.
The Gene Technology Laboratory: There are no unique or specific safety risks
associated with recombinant DNA work (genetic engineering); the risks are no
greater than those associated with work with known pathogens and do not
necessitate special laboratory design or practice.
An aid to the selection of suitable laboratory
facilities and practices is provided in Table 1.
Table
1: Proposed safety levels for work with recombinant DNA technique*
|
Source of donor DNA |
Disease-producing potential |
Required laboratory classification |
|
Viruses |
Nonpathogenic |
Basic
Laboratory According
to laboratory classification appropriate for donor organism |
|
Prokaryotes |
Nonpathogenic Pathogenic |
Basic
Laboratory According
to laboratory classification appropriate for donor organism |
Eukaryotes |
Nonpathogenic/and/or
no Pathogenic
and/or toxin production Sequence coding for highly achieve biological
substances |
Basic
laboratory Appropriate
to the known or conjectural risks2 |
* These recommendations do not preempt
national guidelines or regulations.
A Work with eukaryotic infectious agents is
classified according to the risk group of the donor. When other eukaryotes are
used as donors and when predetermined DNA sequences that code for toxins or
highly active biological substances are manipulated, the laboratory
classification as to be chosen that is suitable to the known or conjectural
risks. A careful assessment of these risks should be performed in consultation
with the appropriate authorities and/or experts.
A.
Microorganisms
1.
Classification of
micro-organisms on the basis of risk groups:
Preamble: Recombinant DNA technique includes three components: the selected
sequence of DNA of the Donor (any living species or even synthetic sequences),
the Vector usually a virus or a plasmid (that may be endowed with the
potentiality of autonomous replication) that carries the ligated donor
sequences into the recipient host, and the Host, invariably a microbial cell or
a cultured cell. To achieve the required biotechnological potential,
manipulation of all the three components are essential. Therefore any
guidelines drawn up will take into account hazards posed by al the three
components, viz., the donor, the vector and the host. It is now accepted that
the hazards posed in recombinant DNA technology is not more than that of the
donor microorganism. Therefore in the fitness of things, for framing the
guidelines, it would be appropriate to consider the classification of donor
micro-organisms according to the hazard posed by it and the respective
containment measures which are required to be followed.
Accidental infection of
laboratory workers with pathogenic microorganisms has paralleled the entire
development of the microbiological sciences. The literature is repleted with
accounts of these accidents. The increase in the laboratory acquired infections
despite of advances in containment techniques is probably due to the volume of
microbiological research; and the broadened spectrum of infectious agents under
investigation. With experience gained, it is now possible to classify the
microorganisms according to the risks posed by them to the handlers, and the
ease of their transmission in the society.
In our classification,
certain microorganisms have been classified at a higher or lower category
depending upon the conditions prevalent in the country. For example, Foot and
Mouth Disease virus (attenuated strain) has been assigned to lower Risk Group
since the virus(es) are widely prevalent in the country. Similarly, the other
pathogens widely prevalent in the country are brought under lower category of
Risk Group. Some of the microorganisms not present in the country have been
assigned to a special category requiring highest degree of safety, for example
- Lassa virus, Yellow fever virus, etc.
Bacterial
All bacterial agents not
included in higher classes according to "Basis for Agent Classifications”:
Risk Group II
Actinobacillus - all species except A. mallei,which
is in Risk Group III.
Arizona hinshawii - all serotypes
*Bordetella - all species
** Cl. chauvoei, Cl. difficle Cl. fallax, Cl. haemolyticum,
Cl. histolyticum, Cl. novvi, Cl. perfringes, Cl. septicum,
Corynebacteriumdiptheriae*, C.equi, C.haemolyticum
C. pseudotuberculosis, C.pyogenes, C.renale
Diplococcus (Streptococcus) pneumoniae
Escherichia coli-all enteropathogenic serotypes
Herellea vaginicola
Klebsiella-all species and all serotypes
Letionella
Leptospira interrogans - all serotypes reported in India
Listeria, all species
Mima polymorpha
Moraxella-all species
Mycobacteria-all species including Mycobacterium
avium, M.bovis,
*M. tuberculosis*, M.leprae*.
** Mycoplasma-all species except M.mycoides and
M.agalactiae
Neisseria gonorrhoeae, N. meningitidis*
Pasteurella - all species except those listed in Risk Group III.
*Salmonella- all species and all serotypes**
*Shigella - all species and all serotypes
Sphaerophorus neorophorus
Staphylococcus aureus
Streptobacillus moniliformis
Streptococcus pyogenes, S.equi, S.pneumonine*
Streptomyces madurae pelleteri somaliensis
Treptonema carateum, T.pallidum and T.
pertenue
*Vibrio foetus, V.comma including biotype EIT or and
V. parahemolyticus
Vibrio cholerae
Risk Group III
Bartonella - all species
Brucella - all species
Clostridium botulium, Cl. tetani*
Francisella tularensis
Mycobacterium avium, M.bovis, M. tuberculosis, M. leprae.
Pasteurella multocida type B ("buffalo" and other foreign
virulent strains)
* Cloning agents and strains
for human vaccine production.
** Agents likely to be
employed for recombinant work in Veterinary field.
Fungal
All fungal agents not
included in higher classes according to "Basis for Agent
Classification"
Actinomycetes (including) Nocardia and Actinomyces and Arachina propionica
Blastomyces dermatitidis
Cryptococus neoformans C. fersiminosos
Epidermophyton madurella, E. microsporon
Paracoccidioides brasiliensis
(Sporothrix Trichoderma Trichophyton)
Coccidioides immitis
Histoplasma capsulatum
Histoplasma capsulatum var duboissi
Parasitic
All Parasitic agents not
included in higher classes according to "Basis for Agent Classifications:.
*Entamoeba histolytica
*Leishmania species
Naegleria gruberia
Plasmodium thcilera
Plasmodium fabesia, P.falciparum
Schistosoma
Toxoplasma gondii
Toxocara canis
Trichinella spiralis
Trichomonas
Trypanosoma cruzi
Risk Group III
Viral, Rickettssial and Chlamydial
All viral, rickettsial and
chlamydial agents not included in higher classes. In addition the following :
Influenza virus A/PR8/34
**Newcastle disease virus -
strains licensed for vaccine use Parainfluenza Virus 3, SF4 strain
** Rinderpest - attenuated
virus strain (e.g. Kabatte-O) licensed for vaccine use.
Adenoviruses - Human, all
types
Avian loukosis
Cache Valley virus
CELO (avain adenovirus)
Coxsackio A and B viruses
Corona viruses
Cytomegalo viruses
*Dengue virus, when used for
transmission experiments
Echo viruses - all types
Encephalomyocarditis virus
(EMC)
Flanders virus
Hart Park virus
*Hepatitis-associated
antigen material - hepatitis A and B viruses, non A and non B, HDV Herpes
viruses - except herpes virus simiae (monkey B virus) which is in Risk Group
IV.
Infectious Bovine
Rhinotraechitis virus (IBR).
Infectious bronchitus**
Infectious Bursal diseases
of poultry.
**Infectious
Laryngotraechitis (ILT)
*Influenza virus- all types,
except A/PR8/34 which is in Risk Group I.
Langat virus
Leucosis complex**
Lymphogranuloma venereum
agent.
**Marek's Disease virus
*Measles virus
Mumps virus
**Newcastle disease virus
(other than licenses strain for vaccine use)
Parainfluenza viruses - all
types except Parainfluenza virus 3, SF4 strain, which is in Risk Group I
*Polio viruses-all types,
wild and attenuated
Poxviruses - all types
except Alastrim, monkey pox, sheep pox and white pox, which depeinding on
experiments are in Risk Group III or IV.
**Rabies virus - all strains
except rabies street virus, which should be classified in Risk Group III when
inoculated into carnivores
Reoviruses - all types.
Respiratory syncytial virus
Rhinoviruses - all types
Rinderpest (other than
vaccine strain in use)
Rubella virus
Simian viruses - all types
except herpes virus simiae (Monkey B Virus) which is in Risk Group IV.
Simian virus 40
Ad 7 SV 40 (defective)
Sindibis virus
Rensaw virus
Turlock virus
Vaccinia virus
Varicella virus
Vole rickettsia
Yellow fever virus, 17D
vaccine strain
Risk Group III
African Horse Sickness
(Attenuated strain except animal passage)
Alastrim, monkey pox and
whotepox, when used in vitro
Arboviruses - All strains
except those in Risk Group II and IV
Blue Tongue virus (only
serotypes reported in India)
Epstein - Barr viurs
Feline Leukemia
Feline sarcoma**
Foot-and-Mouth Disease virus
(all serotypes and subtypes)
Gibbon Ape Lymphosarcoma
Herpes virus ateles
Herpes simplex saimiri
Herpes simplex 2
HIV-1 & HIV-2 and
strains of SIV
Infectious Equine Anaemia
Lymphocytic choriomeningitis
virus (LCM)
Psittacosis-ornithosis-trachoma
group of agents
Pseudorabies virus
Rabies street virus, when
used inoculations of carnivores
Risckettsia - all species
except Vole rickettsia and Coxiella burnetti when used for vector transmission.
**Sheep pox (field strain)
Swine Fever virus
Vesicular stomatitis virus
Wooly monkey Fibrosarcoma
Yaba pox virus
Non-defective Adeno-2 SV-40
hybrids
Alastrim, monkeypox,
whitepox, when used for transmission or animal inoculation experiments.
Hemorrhagic fever agents,
including Crimean hemorrhagic and
Korean hemorrhagic fever
(Congo) and others as yet undefined.
Herpes virus simae (monkey B
viurs)
Tick-borne encephalitis
virus complex, including Russian Spring
Summer Encephalitis,
Kyasanur Forest Disease, Omsk hemorrhagic fever and Central European
Encephalitis viruses.
SPECIAL
CATEGORY
Bacterial
Contagious Equine Metritis (H. equigenitalis)
Pestis petit de ruminantium
African Horse Sickness virus
(serotypes not reported in India and challenge strains)
African Swine Fever
Bat rabies virus
Blue tongue virus (serotypes
not reported in India)
Exoitic FMD virus types and
sub-types Junin and Machupo viruses
Lassa virus
Marburg virus
Murrey valley encephalitis
virus
Rift Valley Fever virus
Small pox virus - Archieval
storage and propagation
Swine Vesicular Disease
Veneseulan equine
encephalitis virus - epidemic strains
Western Equine encephalitis
virus
**Yellow fewer virus - Wild
strain,
Other Arboviruses causing epizootics and so far not recorded in
India.
2. General scientific considerations*
for risk assessment of microorganisms: Attempt
is made to set out basic scientific considerations that may be relevant in
assessing the possible risks associated with the use of rDNA organisms.
Although the list attempts to be comprehensive as far as present knowledge
allows, not all the points included will apply to every case. It is to be
expected therefore that individual proposals will address only those issues
that are relevant to the proposed work. The level of detail required is also
likely to vary according to the nature of the proposal.
A. Characteristics
of Donor and Recipient Organisms
1. Taxonomy, identification, source, culture
a.
Name
and designations.
b.
The
degree of relatedness between the donor and recipient organisms and evidence
indicating exchange of genetic material by natural means.
c.
Characteristics
of the organism which permit identification and the methods used to identify
the organisms.
d.
Techniques
employed in the laboratory and/or environment for detecting the presence of,
and for monitoring, numbers of the organisms.
e.
The
sources of the organisms.
f.
Information
on the recipient organisms's reproductive cycle (sexual/asexual).
g.
Factors
which might limit the reproduction, growth and survival of the recipient
organism.
2. Genetic Characteristics of donor
and recipient organisms
a.
History
of prior genetic manipulation
b.
Characterisation
of the recipient and donor genomes.
c.
Stability
of recipient organism in terms of relevant genetic traits.
3. Pathogenic and physiological
traits for donor and recipient Organisms
a.
Nature
of pathogenecity and virulence, infectivity, or toxicity.
b.
Host
range
c.
Other
potentially significant physiological traits.
d.
Stability
of these traits
B. Character
of the Modified Organism
a)
Description
of the modification
b)
The
nature, function and source of the inserted donor nucleic acid, including
regulatory or other elements affecting the function of the DNA and of the
vector.
c)
The
method(s) by which the vector with insert(s) has been constructed.
d)
Method(s)
for introducing the vector-insert into the recipient organism and the procedure
for selection of the modified organism.
e)
The
structure and amount of any vector and/or donor nucleic acid remaining in the
final construction of the modified organism.
f)
Characterisation
of the site of modification of the recipient genome. Stability of the inserted
DNA.
g)
Frequency
of mobilization of inserted vector and/or genetic transfer capability
* Genetic Manipulation Advisory Group Medical Research Council :
ACGM/HSE/ Note-3
C. Expression
and properties of the gene product
a)
Rate
and level of expression of the introduced genetic material. Method and
sensitivity of method.
b)
Activity
of the expressed protein.
c)
Allergenig
hazard of the product.
d)
Toxic
hazard of the product.
3. Host/Vector systems: Host/Vector Systems are three categories,
normal (10-3), disabled and especially disabled. Disabled and
especially disabled host/vectors have an access factor of 10-6 and
10-9 respectively. Use of these vectors, naturally brings down the
physical containment level.
Criteria for disabled host/vector system: The disabled host/vector
systems listed are based on the following considerations, which are given here
to assist investigators who may wish to generate new vectors or to adapt or
modify existing ones.
In general, vectors must be
safe not only to human-beings but also to domestic animals. There should not be
any neoplastic effect.
Bacterial plasmid based cloning systems
1.
Plasmids
must not be self transmissible.
2.
Non
mobilisable or only very inefficiently mobilisable. These plasmids should not
code for the mobilisation proteins and also must be deficient in nic
site on which the mobilisation proteins act. Such plasmids have an access
factor of 10-6 even on normal E.
coli host.
Bacteriophage lambda based cloning systems
1.
Must
have reduced host range, achieved by the incorporation of amber mutuations
(reversion frequency 10-5 or less) in two different genes not
involved in lysis.
2.
Must
be non lysogenic; achieved by deletion of phage attachment site and defective
repressor (CI) gene.
3.
Must
not propagate in the plasmid mode.
4.
If
the repressor is temperature sensitive, the host strains must be rec A mutants.
5.
If
a lysogenic phage vector is used then the host must be disabled, like E.coli strains DP50 Sup F or MRCI.
M13 vector systems
1.
F-factor
in the host must be defective for mobilisation.
2.
Vector
must have amber mutuations in atleast two genes.
i)
Host-Vector systems for Bacillus subtilis
HVI Host strains: RUB 331,
BGSC 1S53, BD224, PSL1, CU403.
Plasmids: pUB110, pC194,
pS194, pPSA2100, pE194, pBD15 (pE194) cop6) pT127, pC221, pC223, pAB124
and their recombinant derivatives e.g. pBD9, pBD12.
HV2 Host strains: Aspergenic
strain ASB298
Plasmids : pUB110, pC194, pS194, pSA2100, pE194, pBD15 pT127,
pUB112, pC221, pC223, pAB124, pBD9, pBD12, etc.
ii)
Escherichia coli K12:
Vectors for E.coli
pAA31; pNo 1523; pSCC31; pGA22; pLG338;
pBEU43; pKN402; pBR312; pBR313; pBR315; pBR320; pBR322; pBR325 pBR327; pKT21;
pKTH605 pMC 1871; pMK20; pUc5; pUc3; pUc4; pUc6; pUc7; pUc8; pUc9; pUR2, pWR4.
iii)
Bacteriophage:
Vectors for bacteriophage M13
M13mp7; ml3Gori 1
l1059; l1127; l2001; Charon 4; Charon 4A;
Charon 10; Charon 27; Charon 28; Charon 34; lEMBL3; lEMBL4; lgt10; lgtii, lgtWES; lB; lNM607; Homer I; pEMBLB; pCP3; pLC28; pBN37;
pWT571; pOP203-1; pEX1; pKH4; pKT241; ptac11; pKO4; l21; pEP74.
iv)
E.coli K12/S. cerevisiae hybrid systems:
Yeast E.coli shuttle vectors
YIpl, YIp5, YEp4, YEp13, YEp24, YEp135, YRp7, YRp12, Yrp17, YCpR1,
pAH5, pAH9, pMA301, pMAC561, pAAR6, pMC2010, YEp6.
v) Plasmid Vectors for cloning DNA in Streptomyces
|
Vector |
Copy No. |
Size, KB |
Parent replicon |
Markers |
|
5 |
14.8 |
SLP1.2 |
Ltz+,tsr
aphI |
|
|
*pIJ
486/487 |
100 |
6.2 |
P1J101 |
tsr neo |
|
*pIJ
702 |
100 |
5.8 |
P1J101 |
|
|
pIJ
941 |
1 |
25.0 |
SCP2* |
Ltzt+ tsr
hyg |
|
pMS
63 |
100 |
5.0 |
PIJ101 |
tsr aph |
|
pSK
21-K3 |
20 |
8.0 |
PSK2 |
|
|
pSW1 |
5 |
16.6 |
PSG2 |
tsr cat |
|
pVE30 |
High |
7.7 |
PVE1 |
sr vph amp |
|
*pIJ922 |
1 |
24 Phage Vectors |
SCP2* |
Tsr, Ltz |
|
*KC515 |
— |
j 38.6 |
C31 |
vph, tsr |
|
KC
684 |
— |
j 40.5 |
C31 |
tsr lac Z |
|
PM8 |
— |
j 39.3 |
C31 |
tsr hyg fd ter |
|
TG78 |
— |
j 38.8 |
TG1 |
* often used
vi) Pseudomonas putida
HVI Strain KT 2440
Plasmids pKT 262, 263 and 264
vii) Host-vector
systems for Haemophilus (Mainly for
self-cloning work).
Strains : Haemophilus influenzae Rd
Haemophilus
parainfluenzae (rough strain)
Plasmids : pRSF0885
and its derivatives
pJI-8
pDM2
pJI-8
novr strr 44
viii)Vectors for DNA transfers through Agrobacterium
Binary
vectors (To be used in combination with any Ti plasmid containing vir genes.)
1. pRAL
3940
2.
pCEL 44
3.
pGA 471
Receptor and intermediate vectors
1.
pGV 3850
pLGV
1103
2.
pTiB6S3SE
pMon200
Vectors
for H. influenzae Rd and H. parainfluenzae
RSF
0885
pJI-8
pDM
2
Binary vectors: Ti plasmids regions carrying
the T-DNA and the vir loci can be physically separated while remaining
functionally intact. T-DNA inserted into Ti-independent replicons for the Argobacterium chromosome) is transferred
to the plant with the help of vir functions provided in trans as
efficiently as T-DNA physically linked to the vir-loci in cis.
The new generation of Binary
Vectors are based on this principles:
|
S. No. |
Vectors |
References |
|
1. |
Vehicle
PAL 1050 used with plasmid pAL 4404 |
Hoekema
et. al. Nature 303 (1983) 179-80 |
|
2. |
Vechicle
13 and 19 used with plasmids pAL 4404 |
|
|
3. |
Vehicle
pGA 436 or 437 or 438 used with plasmid pTi A 6 or pTi 37 |
An
et al. EMBO J. 4(1985) |
|
4. |
Vehicle
pPCV 310 or pPCV 311 used with plasmid pMP 90 RK. |
|
|
5. |
Vehicle
Micro Ti: pRK used with plasmid pTi B6-806 |
de
Framond et al. Mol. Gen. 202 (1986) 125-131. |
Cointegrate Vectors: Foreign genes carried by pBR-like intermediate
vectors are transferred from E.coli into
A. tumefaciens and recombined into
acceptor Ti plasmids by conintegrate formation involving a single cross-over
between homologous pBR sequences of the Ti plasmid and the intermediate vector.
|
S. No. |
Vectors |
References |
|
1. |
Vehicle
pMON 120. Cocultivation with pTiB 653 |
Fraley
et al PNAS 80 (1983) 4803-4807 |
|
2. |
Vehicle
pNo1, Cocultivation with pTi C58 |
|
|
3. |
i) Vehicle pGV 3850
cocultivation with pTiB 653 ii) Vehicle pGV 831
cocultivation with pGV 2260. |
Deblaere
et al. Nucleic Acids Res. 12(1985) 4777-4788 |
A. Information
about vectors in relation to Agrobacterium
1.
Shuttle
vectors for cloning Agrobacterium genes:
pTJS140, pUCD2, pUCD4,
pUCD9p, pSa4, pVCK102 (Cosmid) and pHK17 (Cosmid.)
2.
Plasmid
with vir genes: pTVK25
3.
Vectors
for gene transfer:
a.
Based
on pBR322 - pLGV2381, pGV3850
b.
Minivector
- pRAL3940
c.
Requiring
vir genes in trans - pAL1050
d.
Split
end vector system - pTiB6S3SE and pMON200
e.
Broad
host range vector systems-pKan1, pKan1a, pZein6a & 8a
B. Information about vectors in relation
to E.coli
1.
Vectors
for cloning:
|
S. No. |
Vector type |
Name of Vector |
|
1. |
Lambda
phage based |
Lambda
gt 10, Lambda Charon 4A and Lambda EMBL3 |
|
2. |
Transmid
vector |
pRRA101 |
|
3. |
Cosmid
vector |
pHC79,
pDZCos 2, pLAFRI (Broad host range) |
|
4. |
Broad
host range |
pRK290,
pSUP106, pVK102, pRK325 cloning vectors |
|
5. |
Other
cloning vectors |
pBR322,
pBR325, pBR327, pBR328, pNG16, pCED6, pMK2004, pKT231, pUr222, pACYC177,
pACYC184, pNC874 pSUP106, pKO1, pUC7, pUC8, pUC9, pUC13, pUC18, pUC19, pUCD2,
pUCD4 |
|
6. |
Broad
host range expression vectors |
pNM185 |
|
7. |
Expression
vectors |
pRL31,
pKK223-3, pPLC236, pATH2, pTR262 |
2. Vectors for sequencing:
pVH51,
pCB221, M13mp7, mp8, mp9, mp11, mp18 and mp19.
Details of Host Vector
Systems in Cyanobacteria
|
S. No. |
Recombinant plasmid |
Cyanobacterial plasmid & host |
Construction of recombinant plasmid |
Function of the recombinant plasmid |
|
1. |
PDF30
(14Rb,9.33MD) Ampr, Camr |
pDF3,
Anacystis nidulans 6311 |
pDF3+pBR325
transforms both E.coli |
Shuttle
vector A. nidulans and |
|
2. |
pUC104 (12.2kb,8.13Md) Ampr, Camr |
pUH24
A.nidulans RZ |
pUC1(deletion
derivative of a pUH24:: Tn901 plasmid |
Shuttle
vector transforms both A.nidulans and
E.coli |
3. |
pAQE2
(8.8kb,5.9Md) Ampr |
pAQ1+pBR322 |
Shuttle
vector transforms both A. quadruplicatum
and E.coli |
|
|
4. |
pAQE10
(10.3kb, 6.9Md) Ampr, Camr |
pAQ1+pBR325 |
" |
|
|
5. |
pGL4
|
pGL2+pBR328 |
Hybridplasmid
maintained in E.coli |
|
|
6. |
pGL5
|
pGL3+pBR328 |
" |
|
|
7. |
pRL1 |
pDU1 NostocPC7524 |
pDU1+pBR322
+Camr fragment from pBR328 |
Shuttle
vector capable of conjugative transfer from E.coli to Anabaena and
transforms E.coli |
|
8. |
pRL5 |
pDU1 NostocPCC7524 |
pDU1+pBR322
+Camr fragment from pBR328+ Smr fragment from R300B |
Shuttle
vector capable of conjucative transfer from E.coli to Anabaena and
transforms E.coli |
|
9. |
pRL6 |
PDU1 NostocPCC752 |
pDU1+pBR322
fragment from pBR38+ Kmr
fragment of Tn5 |
Shuttle
vector capable of conjugative transfer from E.coli to Anabaena and
transforms E.coli |
|
10. |
pSp8
|
0.95Md
plasmid from P.boryanum plasmid
UTEX954 |
P. boryanum +pBR322 |
Disabled
E.coli host vectors**
|
S. No. |
VECTOR |
HOST |
ACCESS FACTOR |
|
1. |
Plasmids |
|
|
|
2. |
pAT153,
pACYC184 |
E.coli K12 |
10-6 |
|
3. |
pUC
series |
E.coli K12 |
10-6 |
|
4. |
pBR322,
pSC101 |
Recombination
deficient strains of E.coli K12 |
10-6 |
|
5. |
mob – derivatives of Inc F,P,Q,W
and X group plasmids |
Especially
disabled strains of E.coli K12 |
10-9 |
|
6. |
mob – derivatives of Inc F,P,Q,W and X group plasmids |
E.coli K12 |
10-6 |
For reference, the following
plasmids which were listed individually in GMAG Note 9 and supplements can be
assigned Access Factors as follows:
|
S. No. |
VECTOR |
HOST |
ACCESS FACTOR |
|
1. |
pBR313,
pMB9, pAC134 pWT111, pWT121, pWT131, |
Recombination
deficient strains of E.coli K 12 |
10-6 |
|
2. |
pOP213-13,
pOP95-15 |
|
|
|
3. |
pBR327,
pBR328, pWT211, pWT221, pWT231 |
Especially
disabled strains of E.coli K12 |
|
2. Bacteriophage
lambda based vectors
|
S. No. |
VECTOR |
HOST |
ACCESS FACTOR |
|
1. |
lgt WES. l B |
With
recA – strains of E. coli K
12 |
10-6 |
|
2. |
l Charon 3 A |
With
any strain of E.coli K12 |
10-6 |
3. M13
Vectors (with nonsense mutations)
|
1. |
M13
Mp 2 am4 |
JM101
(tra D36) |
10-6 |
|
2. |
M13
Mp 73 |
JM103 |
10-6 |
4. Cosmid
Vectors
|
1. |
pJC74,
pJC79, pFF2 |
E.coli K12 |
10-6 |
|
2. |
Homer
I |
MRC8 |
10-9 |
** Genetic
Manipulation Advisory Group, Medical Research Council GMAG NOTE-14.
Disabled yeast host/vector
systems
5. The following Saccharomyces cerevisiae vectors when used in conjuction with
standard S. cerevisiae host strains
have been accepted as having an Access Factor of 10-6 provided that
the vector's foreign sequences come from the listed vectors.
5.1 a bacterial plasmid or a bacteriophage
vector in which a selectable yeast nuclear gene has been inserted (such vectors
do not replicate autonomously in yeast but can integrate by homology into yeast
nuclear DNA);
5.2 a bacterial plasmid or a bacteriophage
vector in which has been inserted a segment of yeast nuclear DNA that contains
a selectable function and which is also able to replicate in yeast (such
vectors may integrate by homology into yeast nuclear DNA or remain free as an
autonomous replicon with a single copy per yeast cell).
5.3 a bacterial plasmid or a bacteriophage
vector in which has been inserted the yeast '2 micron' plasmid and a selectable
yeast nuclear gene (such vectors integrate by homology into yeast nuclear DNA).
6. The S.cerevisiae host strains SHY 1,2,3 have been accepted as having an
Access Factor of 10-9 when used in conjuction with any of the S. cerevisiae vectors referred to above.
NB When any of the above S. cerevisiae/E.coli chimaeric vectors
are grown in E.coli hosts the access
factor should be based solely on the bacterial components of the systems.
Bacillus subtilis host/vector systems
7. ACGM considers that proven
asporogenic mutant derivatives of B.
subtilis, with the following plasmids as vectors warrant an Access Factor
of 10-6 - pUB110, pC194, pS194, pSA2100, pE194, pT127, pUB112,
pC221, pC223 and pAB124.
4. Strains for self cloning experiments: Self cloning experiments using the strains given below are exempted from notification:
A. Prokaryotes
1.
E. coli K12 and other well
characterised non-pathogenic laboratory strains of E.coli.
2.
Bacillus subtilis.
3.
Bacillus stearothermophilus
4.
Bacillus thuringiensis.
5.
Non
pathogenic strains of Streptomyces
6.
Nonpathogenic
strains of Micromonospora
7.
Strains
of Nocardia mediterranei.
8.
Klebsiella pneumoniae strain M 5 al.
9.
Acremonium chrysogenum
10.
Pencillium chrysogenum.
11.
Non-pathogenic
strains of Haemophilus.
B. Eukaryotes
1.
Saccharomyces cerevisiae
2.
Neurospora crassa with selected vectors.
3.
Mouse
cells with polyoma virus.
C. Strains
with shuttle vectors
E. coli K12 carrying recombinant plasmids constructed in
i.
Klebsiella pneumoniae M5 al.
ii. Saccharomyces cerevisiae
iii. Streptomyces
iv. Haemophilus
v.
Bacillus
5. Gene Exchanger Classification: The Gene Exchanger classification is mostly adopted from NIH guidelines. In the case of organisms covered under the list on various subgroups appropriate containment levels must be followed as per guidelines:
Subgroup A: Generally included Escherichia,
Shigella, Salmonella, Enterobacter, Citrobacter, Klebsiella, Erwinia,
Pseudomonas (P.aeruginosa P. putida and P.
fluorescence), Serratia marcescenes, Yervinia entrocalitica.
Subgroup B: Bacillus subtilis, B. licheniformis, B. pumilus, B. globigii B. niger,
B. nato, B. amyloliquefaciens, B. atterimus.
Subgroup C: Streptomyces aureofaciens, S. rimosus, S. coelicolor
Subgroup D: Streptomyces griseus, S. cyaneus, S. venezuelae
Subgroup E: One way transfer of S. mutans or
S. lactics DNA into S. sanguis
Subgroup F: Streptococcus sanguis, S.
pneumoniae, S. faecalis, S. pyogenes and S. mutans
Subgroup G: Haemophilus influenzae Rd and H. parainfluenzae R strain
Subgroup H: Agrobacterium tumefaciens and Rhizobium certain species
6.
Toxin classification
I. LD50 less than 100 ng/kg body weight
Botulinum, tetanus, diptheria, Shigella
dysenteriae neurotoxin (Cloning of these toxins genes are prohibited).
II. LD50 less than
100 mg (but more than 100 ng/kg body wt.)
(Genes falling in this range can be cloned)
i) LD50 100-1000 ng/kg body wt. includes
abrin. Clostridium perfringens epsilon
toxin (P2+BC2) or (P3 + BC1)
ii) LD50 1mg-100 mg (P1 + BC1)
Under the guidelines cloning
of Staphylococcus aureus alpha and
beta toxins. B. pertussis toxin,
cholera toxin and the heat labile toxin of E.
coli in organisms other than E. coli are
subject to prior review.
7.
Categorisation scheme based on
risk assessment*
The values prescribed are
all probabilities per unit bacterium, a value of 1 means all bacteria are
expected to have access, express a polypeptide or cause some biological damage.
10-3 means a chance of this occuring is 1 in thousand bacteria.
1. Access factor
The probability of entry and
survival of the manipulated organism, in the target tissue/cell if they escape
by chance.
Table below illustrate the
calculated figures or established systems.
|
Organism |
Access factor |
|
Wild type E.coli
(enterobacterium) |
1 |
|
E.coli K12 or similar lab strains
(normal) |
10-3 =BC1 |
|
Disabled host/vector systems |
10-6 =BC2 |
|
Non mobilisable vector in disabled host |
10-9 >BC2 |
|
Genetically
manipulated DNA in tissue culture cells. This DNA cannot infect by itself |
10-12 |
2. Expression factor
Probability of translation
of the gene in the manipulated organism and secretion of the cloned gene
product from the altered organism
Following
table lists calculated factors for certains DNAs.
|
DNA cloned specifically for its expression |
1 |
|
cDNA from which expression is not sought
deliberately |
10-3 |
|
Genetic DNA in a known plasmid |
10-3 |
|
DNA whose non-expression is clearly demonstrated |
10-6 |
|
Genetic
DNA in non-expression sites |
10-6 |
* Genetic
Manipulation Advisory Group Medical Research Council GMAG Note -14
3. Damage factor: The probability that the
expressed product cause physiological damage to the individual. Only
approximations are possible here. DNA molecules both singly stranded and double
stranded may not survive in individuals. Regarding proteins before assigning a
factor one should show its effect in animal systems.
Damage factor for certain specific cases
|
Expression
of toxic or a biologically active substance in quantities large enough to
have significant biological effect. |
1 |
|
Expression
of Biologically active substance in quantities large enough to cause serious
deleterious effect if it were delivered and completely absorbed at the target
tissue |
10-3 |
|
Expression
of biologically active substances at levels lower than that of the normal
body level |
10-6 |
|
Expression
of proteins which do not have any biological effect or of substances which
already exist in large quantities. |
10-9 |
Assignment Risk category
must be done taking all the three factors access, expression and damage
together into consideration.
Example
|
S. No. |
Damage |
Access |
Expression Risk |
Calculated |
Category |
|
1. |
Hormones
Toxins and host Biologically |
Disabled |
+ |
10-6 |
III / IV |
|
2. |
Uncharacterised
E.coli K12 polypeptides of unknown |
|
+ |
10-6 |
III |
|
3. |
Uncharacterised
disabled polypeptides of host |
|
+ |
10-9 |
II |
A comprehensive listing
could be prepared with the available date from the literature. Further the
Principal Investigator should make every effort to furnish this data based on
scientific forethought to IBSC in case his/her experiments are not classifiable
with the available information.
Category I:
Experiments
in category I need not be reviewed by the IBSC.
B. Large Scale Operations
1. Physical Containment Conditions For Large-Scale (20L)
Fermentation Experiments And Production
A.
Cultures
of viable organisms containing recombinant DNA molecules shall be handled in a
closed system (e.g. closed vessel used for the propagation and growth of
cultures) or other primary containment equipment (e.g. biological safety
cabinet containing a centrifuge used to process culture fluids) which is
designed to reduce the potential for escape of viable organisms.
B. Cultures fluid shall not be removed from a closed system or other
primary containment equipment unless the viable organism containing recombinant
DNA molecules have been inactivated by a validated inactivation procedure. A
validated inactivation procedure is one which has been demonstrated to be
effective using the organism that will serve as the host for propagating the
recombinant DNA molecules.
C. Sample collection from a closed system, the addition of materials
to a closed system and the transfer of culture fluids from one closed system to
another shall be done in a manner which minimises the release of aerosols and
contamination of exposed surfaces.
D. Exhaust gases removed from a closed system or other primary containment
equipment shall be treated by filters which have efficiencies equivalent to
HEPA filters or by others equivalent procedures (e.g. incineration) to minimise
the release of viable organisms containing recombinant DNA molecules to the
environment.
E. A closed system or other primary containment equipment that has
viable organisms containing recombinant DNA molecules shall not be opened for
maintenance or other purposes unless it has been sterilised by a validated
sterilisation procedure. A validated sterilisation procedure is one which has
been demonstrated to be effective using the organism that will serve as the
host for propagating the recombinant DNA molecules.
F. Emergency plans as and when required shall
include methods and procedures for handling large losses of cultures on an
emergency basis as recommended by IBSC and approved by the competent authority.
2. Criteria
For rDNA GLSP Micro-organisms ***
|
Host Organism |
rDNA Organism |
Vector/Insert |
|
Non-Pathogenic |
Non-Pathogenic |
Well
characterised and freefrom known harmful sequence |
|
No
adventitious Agents |
As
safe in industrial setting as host organism, but with limited survial without
adverse consequence in environment |
Limited
in size as much as possible to the DNA required to perform the intended
function; should not increase the stability of the construct in the
environment (unless that is a requirement of the intended function) |
|
Extended
history of safe industrial use, OR |
|
Should
not transfer any resistance markers |
|
Built-in
environmental limitations permitting optimal growth in industrial setting but
limited survival without adverse consequences in environment |
|
Should
not transfer any resistance markers to micro-organisms not known to acquire
them naturally (if such acquisition could compromise use of drug to control
disease agents) |
*** Genetic Manipulation Advisory Group,
Medical Research Council: ACGM/HSE/Note-3
3. Use of rDNA
Technology in Vaccine Development: The issue of licenses for the manufacture of
genetically engineered vaccine need to be considered only when the recommended
facilities for the category or the organism in question is provided for an inspected physically by the
competent authority.
For large scale fermentation
experiment and production (20 litres capacity) four levels of containment as
mentioned in Chapter II would be applicable. Important thing is to use a closed
system.
However following review of
the IBSC of appropriate data for a particular host-vector system more latitude
in the application of the guidelines may be permitted.
Experiments exempt from guidelines:
1.
Self
cloning experiments (except in Risk Group II and above)
2.
Experiments
involving DNA from bacteria within an exchanger sub-group as recommended by
WHO. This shows proposed safety levels for work with rDNA techniques, only the
non-pathogenic organisms mentioned are exempt.
3.
Experiments
involving E.coli K12, Saccharomyces cerevisiae Baccilus subtilis and
Streptomyces lividens recommended
host vector system are exempt from guidelines except those utilising DNA of
etiologic agents from Risk Group II and above, requiring case by case approval,
or cloning of toxin genes (producing LD50 at less than 50 ug/kg. of body weight
of vertebrates) or large scale growing.
Experiments covered under the guidelines
Experiments not falling
within the ambits of above exemptions would require adherence to the general
guidelines. As a rule, DNA of a donor agent falling within a particular risk
group (say II) will require facilities pertaining to next higher group agents
(risk group III). However, the exact requirements would be decided by the IBSC
on a case by case basis. A few examples of cloning agents and strains for human
vaccine production using new technology are given in Chapter V: A1. See
Asterik(*).
A list of genes that are
currently being cloned, likely to be cloned in the veterinary field in India
has to be continually updated. This list should include all the cell vectors,
infective and non-infective agents likely to be employed for recombinant DNA technology
work (Chapter V:A1. See Asterik (**). In these cases, the risk classification
has to conform to the standards laid down in the guidelines.
List of
Cells With Various Characteristics And Levels Of Concern About Their Use As
Substrates
|
A. CELL LINE |
CHARACTERISTICS |
||||
|
|
Life span |
Chromosomes |
Tumorigenicity |
Risk Group |
Containment |
|
Fibroblasts (WI-38) |
Finite |
diploid |
Negative |
0 |
P0 |
|
Continuous |
|
|
|
1 |
|
|
Kidney (VERO) |
Infinite |
Abnormal |
Negative |
2 |
P2 |
|
Tumour (Hela) |
Infinite |
Abnormal |
Progressive |
4 |
P3 |
|
BHK-21 |
Infinite |
Abnormal |
Progressive |
3 |
P2 |
4. The Quality Control of Biologicals Produced by Recombinant Technology: Now we are just at the beginning at the manufacturing scale and the present experience may not be adequate to control problems which may be encountered. Therefore, the proposed requirement for controlling the safety, purity and potency of the biological products produced by Recombinant DNA Technology must be regarded as flexible and subject to change as experience of the manufacturers and use of such products increases.
The control proposals: The
control of biologicals produced by Recombinant DNA methods, the following
topics are of concern:
1.
Molecular
identity of product,
2.
Biological
potency,
3.
Purity,
4.
Toxicity,
5.
Immunogenicity
6.
Consistency
of production.
Starting Material: A description of the host cell and of the expression vector used in the
production and an explanation of the measures used to promote and regulate the
expression of the cloned gene will be expected.
Expression System: Recombinant DNA technology involves a process of systematically
arranging and manipulating the nucleic acid segments to produce a novel
molecule which is then placed into an appropriate host system/environment which
would yield a desired product. Therefore, the manufacturer should provide a
description of:
(i)
The
method used to prepare the segment coding for desired product including the
cell type and origin of source material, detailed nucleotide sequence analysis
and restriction enzyme digestion map of the cloned segments including the
additional sequences if present. In addition, the information on the
construction of the vector used for expression of the cloned nucleotide
segments into its respective product should also be thoroughly described.
(ii)
The
restriction enzyme digestion map of the entire constructed vector should also
be provided.
(iii)
The
host cell system which has been utilised for generating the product for the
expression host should also be provided including its source, phenotype,
genotype etc.
(iv)
Cloning
history and methodology should also be described.
(v)
The
information of the new masters cell bank, if any, are to be provided by the
manufacturing unit.
Master Cell Bank: The host cell chosen for the expression of the Recombinant DNA products
should be maintained as a seed bank, in seedlots in order to ensure genetic
stability of the host cell utilised. The purity of the cell in the seedlot
should be assured by isoenzyme analysis, auxotrophy, antibiotic resistance and
karyology as appropriate.
Manufacturing Products: Details of fermentation of culture used in the
manufacture of the product will be required. Test for microbial contamination
should be carried out and the information about the sensitivity of the methods
used to detect contaminants, provided. Details of methods used to purify the
gene product and the efficacy of the purification used, to remove host cell
polypeptides etc., and other impurity, demonstrated.
Purification: The methodology for harvesting, extracting and purification should be
described in detail and removal of any toxic chemicals produced by this
procedure should also be demonstrated. The extent of purification of DNA
recombinant products should be consistent with the intended use of the product.
The purification process should eliminate specifically, detectable viruses,
nucleic acid or non target antigenic material present in it.
Characterisation of the Product: The evidence of purity of the product should
be established and the identity of the product with the reference preparation
should be derived from the wider variety of tests available. The tests may
include the following:
A. (1)
Composition analysis of amino acid.
(2)
Partial sequences analysis
(3) Peptide
mapping
(4) Polyacrylamide
gel electrophoresis (PAGE) and iso electric focussing (IEF).
(5) High
performance liquid chromatography (HPLC) etc.
(6) Other
characterisation.
B. Biological
test for identity and potency.
C. Tests
for contaminations.
(1) Pyrogen
contamination,
(2) Viral
contamination,
(3) Nucleic
acid contamination,
(4) Antigen
contamination,
(5) Microbial
contamination.
D. Toxicity
test and analysis: A recombinant DNA product demonstrated to be identical to
naturally occurring substance for which pharmacological and toxicological data
exists at the doses levels intended for use, then they are not to be developed.
The data will be required for the product which are developed having minor
modification in their chemical and physico-chemical characteristics. The
product, with radically altered chemical structure from natural substance would
require an elaborate animal tests including those for carcinogenicity,
teratogenicity, effects on fertility etc. The specific tests which might be
appropriate are best addressed on a case by case basis with the appropriate
authority.
Clinical Trial: Clinical trails will be necessary
for all products derived from DNA technology to evaluate their safety and
efficacy. The efficacy of each biological must be proven for license by
biometrically significant immunogenicity test in each host animal species. Five
replicate potency tests must be conducted according to the outlines and
geometrical average must be taken for the host vaccine. Challange
immunogenicity tests in a significant number of animals to establish
biostatistically significant proof of margin for efficacy. The testing of these
new product should be undertaken in the controlled environment and evaluated
carefully before their release to the market under license. The testing of the
product should be bound by the guidelines already available for handling of the
Recombinant DNA products.
Control of Final Product: The toxicity of the Recombinant DNA derived product,
which deviates in any way from its natural counter part or entirely a novel
molecule, is likely to require more extensive investigation, on a case by case
basis.
C.
Plants and Agriculture
The application of genetic
engineering to agriculture is directed to deliver products whose research,
evaluation and commercial use would require studies on introduction into the
field. These products include genetically engineered plants, microbes, animal
vaccines and animals.
Many of the scientific
considerations described in earlier chapter are relevant to plants and animals
derived by rDNA techniques. Additionally, the general considerations (Chapter
V) describing the significance of the donor, recipient and modified organisms
are also essential to safety assessment evaluation.
The proposed regulation
requires a permit for the introduction of any "regulated article"
which is defined as "any organism or product which has been altered or
produced through genetic engineering, if the donor organism, recipient
organism, or vector or vector agent" is specifically listed in the regulation
or which is determined by the competent agency as a plant pest/pathogen that
cause disease to plants. The proposed regulated articles are grouped by class,
order, genus, family and other groupings.
1. Organisms, Pests that cause diseases
to Plants
The taxa or group of
organisms which are or contains plant pest are listed. Organisms belonging to
all lower Taxa contained within the group listed are also included.
1. Virus
All members of groups containing plant viruses, and all other
plant and insert viruses.
The following viruses are
subject to quarantine also
Bean Yellow Mosaic (Pea
strain)
Pea Early Browning
Pea Enation
Cowpea Mottle
Cowpea Mild Mottle
Cowpea Severe Mosaic
Cowpea Yellow Mosaic
Cowpea Ringspot
Soybean stunt
Cucumber Mosaic
(soybean strain & other)
Tobacco Ring spot
(Soyabean strain)
Tobacco Streak
(Soyabean strain)
Tomato Ringspot
Bean Pod Mottle
Soybean Mild Mottle
Soybean stunt Peanut
stripe
Cowpea Mild Mottle Peanut
stunt
Cacao Necrosis Virus Marginal
Chlorosis
(Soybean strain) Cowpea
Mottle
Pea Seed-brone Mosaic (Bambara
groundnut strain)
Cucumber Mosaic Special
Case
(Green gram strain) Nuclear
Polyhedrosis Virus
Black gram mottle Cytoplasmic
Polyhedrosis Virus
Bean Yellow Mosaic Granular
Virus-Baculo
(Green gram strain) Geminiviruses
Cucumber Mosaic Caulimoviruses
(Groundnut strain)
2. Bacteria
Bacillus
thuringiensis
Bacilus
sphericus
Genus Pseudomonas
Genus Xanthomonas
Genus Azotobacter
Genus Rhizobium/Azorhizobium
Genus Bradyrhizobium
Genus Agrobacterium
Genus Phyllobacterium
Genus Erwinia
Genus Enterobacter
Genus Klebzieller
Genus Azospirillum
Genus Acquspirillum
Genus Oceonospirillum
Genus Streptomyces
Genus Nocardia
Genus Actinomyces
Coryneform group
Genus Clavibacter
Genus Arthrobacter
Genus Curtobacterium
Genus Bdellovibro
Rickettsial - like organisms
associated with insect diseases
Gram-negative phloem-limited
bacteria associated with plant diseases
Gram-negative xylem-limited
bacteria associated with plant diseases.
Genus Spiroplasma
Mycoplasma - like organisms
associated with plant diseases
Mycoplasma - like organisms
associated with insect diseases.
3. Algae
Family Chlorophyceae
Family Euglenophyceae
Family Pyrophyceae
Family Chrysophyceae
Family Phaephyceae
Family Rhodophyceae
4. Fungi
Family Plasmodiophoraceae Family
Eurotiaceae
Family Chytridiaceae Family
Ophiostomataceae
Family Hypochytridiaceae Family
Ascophaeraceae
Family Olpidiopsidaceae Family
Onygeneaceae
Family Synchytriaceae Family
Microascaceae
Family Catenariaceae Family
Erysiphaceae
Family Coelomomycetaceae Family
Meliolaceae
Family Saprolegniaceae Family
Xylariaceae
Family Zoopagaceae Family
Diaporthaceae
Family Albuginaceae Family
Hypocreaceae
Family Peronosporaceae Family
Clavicipitaceae
Family Pythiaceae Family
Phacidiaceae
Family Leptolegniellaceae Family
Ascocorticiaceae
Family Mucoraceae Family
Hemiphacidiaceae
Family Choanephoraceae Family
Dermataceae
Family Mortierellaceae Family
Sclerotiniaceae
Family Endogonaceae Family
Cytarriaceae
Family Syncephalastracae Family
Helotiaceae
Family Dimargaritaceae
Family Kickxellaceae
Family Saksenaeaceae
Family Entomophthoraceae
Family Ecerinaceae
Family Protomycetaceae
Family Taphrinaceae
Family Endomycetaceae
Family Saccharomycetaceae
Family Elsinoeaceae
Family Myriangiaceae
Family Dothideaceae
Family Chaetothyriaeae
Family Parmulariaceae
Family Phillipsiellaceae
Family Hysteriaceae
Family Pleosporaceae
Family Melanomotaceae
Family Sacrosomataceae Family
Ganodeniatiaceae
Family Sarcoscyphaceae Family
Labonlbeniaceae
Family Auriculariaceae Family
Sphaeropsidaceae
Family Ceratobasidiaceae Family
Melanconiaceae
Family Corticiaceae Family
Tuberculariaceae
Family Hymenochaetaceae Family
Dematiaceae
Family Echinodontiaceae Family
Moniliaceae
Family Fistulinaceae Family
Aganomycetaceae
Family Clavariaceae
Family Polyporaceae
Family Tricholomataceae
Family Ustilaginaceae
Family Sporobolomycetaceae
Family Uredinaceae
Family Agaricaceae
Family Graphiolaceae
Family Pucciniaceae
Family Melampsoraceae
5. Protozoa
Genus Phytomonas
And all Protozoa associated
with insected diseases
6. Nematodes
Family Anguinidae
Family Belonolaimidae
Family Caloosiidae
Family Criconematidae
Family Dolichodoridae
Family Fergusobiidae
Family Hemicycliophoridae
Family Heteroderidae
Family Hoplolaimidae
Family Meloidogynidae
Family Neotylenchidae
Family Nothotylenchidae
Family Paratylenchidae
Family Tylenchidae
Family Tylenchulidae
Family Adhelenchoididae
Family Longidoridae
Family Trichodoridae
7. Mollusca
Superfamily Planorbacea
Superfamily Achatinacae
Superfamily Arionaceae
Superfamily Limacacea
Superfamily Helicacea
Superfamily Veronicellacea
8. Arthropoda
Superfamily Ascoidea
Superfamily Dermanyssoiedea
Superfamily Eriohyoidea
Superfamily Tetranychoidea
Superfamily Eupodoidea
Superfamily Erythraenoidea
Superfamily Trombidioidea
Superfamily Hydryphantoidea
Superfamily Tarsonemoidea
Superfamily Hydryphantoidea
Superfamily Tarsonemoidea
Superfamily Pyemotoidea
Superfamily Hemisarcoptoidea
Superfamily Acaroidea
Order Polydesmida
Family Sminthoridae
Family Forticulidae
Order Isoptera
Order Thysanoptera
Family Acrididae
Family Gryllidae
Family Cryllacrididae
Family Cryllotalpidae
Family Phasmatidae
Family Ronaleidae
Family Tettigoniidae
Family Tetrigidae
Family Thaumastocoridae
Superfamily Piesmatoidea
Superfamily Lygaeoidea
Superfamily Idiostoloidea
Superfamily Coreoidea
Superfamily Pentatomoidea
Superfamily Pyrrhocoroidea
Superfamily Tingoidea
Superfamily Miroidea
Order Homoptera
Family Anobiidae Family
Torymidae
Family Apionidae Family
Xylocopidae
Family Anthribidae
Family Bostrichidae
Family Brentidae
Family Bruchidae
Family Buprestidae
Family Byturidae
Family Cantharidae
Family Carabidae
Family Cerambycidae
Family Chrysomelidae
Subfamily Epilachninae
Family Curculionidae
Family Dermestidae
Family Elateridae
Genus Helophorous
Family Lyctidae
Family Melodiae
Family Mordellidae
Subfamily Melolonthinae
Subfamily Rutelinae
Subfamily Cetoniinae
Subfamily Dynastinae
Family Scolytidae
Family Seblytidae
Order Lepidoptera
Family Agromyzidae
Family Anthomyiidae
Family Cecidomyiidae
Family Chloropidae
Family Ephydridae
Family Lonchaeidae
Family Muscidae
Family Otitidae
Family Syrphidae
Family Tephritidae
Family Apidae
Family Caphidae
Family Chalcidae
Family Cynipidae
Family Eurytomidae
Family Formicidae
Family Psilidae
Family Siricidae
Family Tenthredinidae
SPECIAL CATEGORY
Some Major Diseases of
Plants Not Yet Recorded in India
|
Disease |
Pathogen |
|
|
Apple,
Pear |
Fire Blight |
Erwinia
amylovors |
|
Apple,
Cedar |
Rust |
Cymnosporangium
juniperi Virginae |
|
Barley,
Rye & other Gramineae |
Scald or leaf Blotch |
Rhynchosporius
secalis |
|
Barley |
Snow mould Leaf spot Halo spot Leaf spot Sterility Disease Take All Bunt Dwarf bunt Basal glume rot |
Fusarium
nivale Dreschslera
buchloes Selenophoma
donacis Septoria
passerinii Pyrenophora
semeniperda (Drechslera
verticillata) Ophiobolus
graminis Tilletia
pancicii Tilletia
contraversa Pseudomonas
atrofaciens |
|
Bean,
Soybean |
Bacterial wilt |
Corynebacterium
flaccumfaciens |
|
Cassava |
Brown streak |
Virus |
|
Cucumber |
Bacterial wilt |
Erwinia
tracheiphila |
|
Date
Palm |
Fusariose or Bayoud |
Fusarium
oxysporus f.sp. albedinis |
|
Maize |
Seedling and Foot rot Wilt Yellow leaf blight Eye spot Freckeled wilt |
Marasmius
graminum Erwinia
stewartii Phyllosticta
maydis Kabatiella
zeae Corynebacterium
nebraskensis |
|
Oats |
Halo blight Snow mould |
Pseudomonas
coronafaciens Micronectriella
nivalis |
|
Oilpalm |
Wilt |
Fusarium
oxysporum f. sp. elacidis |
|
Rice |
Hoja Blanca |
Virus |
|
Blind Seed Disease |
Gloeotinia
temulenta |
|
|
Strawberry |
Red stele, Brown core, root rot |
Phytophthora
fragariae |
|
Sugarcane |
Fiji disease Streak disease |
Virus Virus |
|
Sunflower |
Downy mildew |
Plasmopara
halstedii |
|
Soybean |
Downy mildew |
Peronospora
manshurica |
|
Tobacco |
Blue mould |
Peronospora
tabacina |
|
Wheat |
Take all Eye spot Sterility disease Halo spot Dwarf bunt Yellow Slime |
Ophiobolus
graminis Cercosporella
herpotrichoides Pyrenophora
semeniperda (Drechslera
verticillata) Selenophoma
donacis Tillotia
contraversa Corynebacterium
siranicum |
2. Genetic Manipulation of Plants and
Plant Pathogens
The experiments that
include:
a)
The
introduction of foreign nucleic acid into plants.
b)
The
introduction of foreign nucleic acid into any plant pathogen where pathogen is
defined as "any living organism, other than a vertebrate animal which is
injurious to any plant, and includes any culture of such organism."
Notification: Plant experiments that do
not involve plant pathogen may, where appropriate be initiated once
notification has been given to IBSC.
All experiments involving
the genetic manipulation of plant pathogens and the use of such genetically
manipulated plant pathogens will require approval of IBSC. Use of pathogenic
vectors is mainly two : (i) Agrobacterium
tumefaciens and (ii) Cauliflower Mosaic Virus.
Agrobacterium tumefaciens is used to routinely that it must be considered
analogous to E.coli K12. Apart from
transfer of B. thuringiensis toxin
gene to plants, a new class of experiments, involves transfer of sequences from
plant viruses which impart their resistance to plants to infection of these
viruses (e.g. Tobacco Mosaic Virus, Alfalfa Mosaic Virus etc.) Testing to this
should be in a glasshouse. As much of information as possible should be
provided about the pathogen including its host range, mode of dispersal and
pathogenicity. Isolated plasmids from plant pathogens are not normally
considered as pathogen per se, so that transformation of plant cells by
isolated plasmids of plant pathogens would not normally require approval. The
genetic manipulation of microbes (including plant pathogens) are adequately
covered by the existing rDNA guidelines.
1. Plant Experiments
with no plant pathogens: The growth of whole plants will, however require special environmental
conditions which may be achieved by using glasshouse containment.
Glasshouse Containment A is appropriate to plant experiments involving
no plant pathogens and would be suitable for experiments involving non-pathogen
DNA vector systems and regeneration from single cells. The minimal requirements
for Glasshouses Containment A are :
i)
Plants
should be grown in a designated glasshouse or compartment, clearly marked with
a bio-hazard sign indicating "glasshouse containment A".
ii)
Any
other plants grown in the designated glasshouse or compartment must be handled
under conditions appropriate for the experimental plans.
iii)
Plants
should be managed by suitably trained personnel with the principles of good
glasshouse hygiene.
iv)
The
IBSC should consider whether any additional factors such as pest control,
screening to prevent ingress by vermin, birds and insects and destruction of
surplus plants and seed are relevant to the particular experiment.
2. Plant
Experimentation involving Plant Pathogens: Prior approval for laboratory experiments
involving genetically manipulated plant pathogens, such as the production of
manipulated DNA vector systems for the transformation of cultured plant cells
will normally be needed on the basis of containment categorisation.
Glasshouse
Containment B is appropriate for glasshouse experiments involving (i)
genetically manipulated plant pathogens including plant viruses such as the
propagation of genetically manipulated organism in plants and (ii) the growth
of plants regenerated from cell transformed by genetically manipulated pathogen
vector systems which will still contain the pathogen.
Glasshouse containment B
conditions will be specified by the Committee (RCGM) and will vary with the
pathogen, being particularly dependant on its mode of dispersal, host range and
pathogenicity and they are to be worked out on case by case basis.
Special conditions may be
needed in addition to those given under `A’ to prevent dissemination of the
genetically manipulated plant pathogen especially during transfer between
glasshouse and laboratory, during disposal of plants and equipment and through
survival of pollen, seeds or other biological vectors.
a)
Need
for negative pressure and air filtration double doors etc. in cases where
airborne dispersal is a potential hazard.
b)
Need
for effluent treatment plant where water borne dispersal is a hazard.
c)
Need
for suitable construction of glasshouse (floors, dwarf wall, threshold at door
etc.) in cases where waterborne or soil borne dispersal are potential hazards.
d)
Need
to prevent pollination and seeding, or to contain pollen and seed in cases
where pollen and seed-borne dispersal is a potential hazard.
e)
Need
for measures either to prevent contamination of, or to decontaminate the
clothing of personnel or tools, pots, equipment etc., where mechanical
transmissions is an above average hazard.
f)
Need
to limit the growing of host plants in the vicinity of the containment facility
and to provide monitoring for escape.
Inspection of a 'Glasshouse
Containment B' facility by IBSC will be required before approval.
3. Pre-release tests of genetically
engineered organisms on Agricultural Applications
Safety concerns focus on
whether environmental and agricultural applications of organisms modified by
rDNA technique pose an incremental risk. While at this time, the assessment of
risk rests primarily on extrapolations from experiences with
(i)
the
introduction of naturally occurring organisms to eco-systems to which they are
not native
(ii)
evolution
of noval traits in existing populations and
(iii)
manipulations
of agricultural crops and plant-associated microbes.
No adverse consequences were
noted on introduction of naturally occuring species, or the selected species
evolved for agricultural applications. In analogy, it is expected that the
impact on application of rDNA organism may be low as modified organism have
greater predictability compared to species evolved by traditional techniques.
The assessment may be conducted in small field trials upon clearance of GEAC as
to those done with the introduction of selective species into the eco-system.
I. Rhizobium
(A)
Strains
improved by transfer of genes between rhizobia.
Conventional tests should be sufficient.
These may include the following.
(i)
Elucidation
of genetic markers and host range and requirements for vegetative growth.
(ii)
Effectivity
tests using corresponding legume varieties under the variety of conditions to
which host legume gets exposed in growth chamber and pot culture.
(iii)
Tests
on persistence and stability using isolated small plots.
(iv)
Same
as in (ii) in experimental field plots, for two years.
(v)
Trials
in farmer fields.
The strain to be released
should be highly specific, competitive and stable unless it has been produced
for a special need.
(B)
Strains improved by transfer of genes from heterologous nonpathogenic
bacteria.
(a)
Use
of foreign genes in Agrobacterium.
(i)
Tests to ensure that the strain is not tumour
inducing and does not transform in host-cells.
(ii)
Other
test like in (A) above.
(b) When source of foreign genes is a
non-Rhizobian prokaryote such as Escherichia
coli
(i) Tests for enteropathogenicity on selected
animals.
(ii) Other tests like in (A) above.
II. Bacteria manipulated by any method
should satisfy the following:
(a)
The
manipulated microorganisms should be tested for pathogenicity against its
intended associative partner and also other crop plants.
(b)
They
should not eliminate useful microorganisms like VA-Mycorrhizae. Suitable
testing should be done in this regard before releasing a manipulated organism.
(c)
The
microorganism should not stimulate unwanted plants like weeds.
III. Blue Green Algae:
All the tests as given in A
and B will be applicable except that rice will be the plant against which
beneficial effects of concerned algal strain will be tested.
IV. Crop Plants:
When the improved plant has
been derived by transfer of genes by DNA technique from wild species or a
different organism, tests on the food product and residual presence of agents
toxic to man, cattle and other animals must be done.
4.
Bio-Hazard Evaluation of
Viral, Bacterial, Insecticidal Agents For Large Scale Application:
World Health Organisation
(WHO) has developed programmes for evaluation, testing and safe use of
insecticides to control vector borne diseases of public health, veterinary and
agriculture importance (WHO TRS 634). The criteria (Bull. WHO (1971), 44,
11-22) for assessment of the ecological impact involves controlled testing and
evaluation under field conditions. There are growing number of tested and
accepted biological insect control agents belonging to diverse group such as
bacteria, fungi and certain viruses etc. Some of them are registered in global
market.
Any attempt at genetically
altering, improving changing the host range, target specificity, differential
pathogen toxicity, toxic agent productivity, factors affecting safety and
efficacy, new formulations leading to newer uses of these biological control
agents and related organisms and their products derived through genetic alteration
would require the application of rDNA safety guidelines and regulations as per
categorisation scheme worked out based on risk assessment levels.
Whereas the testing and
large scale use of biological control agents would itself require the normal
course of approval from Directorate of Plant Protection and quarantine under
Ministry of Agriculture, the production testing and use of these genetically
altered agents would be strictly governed by the rDNA guidelines and
regulations of the Government of India. Violations and non-compliance including
non-reporting of the R&D work in this area would attract the punitive
actions provided under the Environmental Protection Act.
Bacterial Agents: Three main groups of bacteria, viz.
Bacillus popilliae, B.thuringiensis and B.
sphericus have been subject of extensive studies. Of these, B.thuringiensis particularly H-14 strain
has been found to be most promising for the control of larvae of lepidoptera,
mosquitoes and black flies. The protein crystal toxin (dendotoxin) of these bacilli acts as potent
gut poison on ingestion by the larvae.
The development of new
mutants of B. thuringiensis (including
the asporogenic strain) producing the same toxin would not require additional
safety evaluation. However, a strain producing modified toxin, possibly with
altered biological activity, would require some additional evaluation of the
live microorganisms and fully safety evaluation of the toxin. When the
toxin-producing gene is transferred to another microorganism complete safety
evaluation would be required.
Insect viruses as control agents: Virus diseases have been reported from more
than 800 species of insects and mites. Major groups of virus pathogens of
insects are being currently studied as control agents for pests. Insect viruses
for pest (i-vi) are produced on an industrial scale.
i)
Heliothis zea
ii) H. virescens
iii) Lymantira dispar
iv) Neodiprion sertifier
v) Orgyia pseudot-sugata
vi) Dendrolimus
The bio-hazard evaluation of
promising viral agents which are naturally occurring entempopathogens should
include the following:
·
Elaborate
tests conducted in the laboratory as well as under green-house conditions to
understand potential physiological and/or genetical hazards for non-target
organisms. The overall response of a species is likely to be polygenic.
·
In
stable ecosystems, where the potential of the viruses can be utilised most
effectively, more information is required on the relationships between host
density and susceptibility, virus production, persistence and transmission.
Analytical approaches provide powerful ways of highlighting the importance of
such factors in virus epizootiology.
·
The
safety measures for large-scale application of such products would require very
careful evaluation since the combination of two or more types of biocides may
affect the non-target organisms particularly those which are beneficial. For
example genus Apis which plays an important role in pollination of oil seeds,
legumes, vegetables, forage and food crops.
·
The
characteristics of baculovirus that is more useful for identification is the
profile produced by cleavage of the rival DNA with bacterial restriction
endonucleases. Such techniques should be used to screen all production batches
which should be preferably purified before release. These batches should also
be examined for the presence of other 'occluded' or 'non-occluded' viruses.
·
Bacteriological
check and other safety tests as mentioned in the WHO guidelines are also
needed.
·
The
purified virus should then be formulated in such a way that its stability both
on the shelf and field is satisfactory.
·
The
biological activity of the propagation should be measured by reproducible and
effective bio-assays to measure the responses in standard activity units which
can be related to the activity of the other batch.
·
The
application of viruses can be most effective in those areas, where there is a
good understanding of the ecology of the host-virus system. The most
appropriate method of 'oryctes' virus introduction, was appreciated when the
effects of virus replication on larvae and adults had been extensively studied.
It is probable that alternative methods of virus introduction, such as the
release of infected host, would become advantageous over other methods.
Recombinant Insect viruses: Autographa
californica nuclear
polyhedrosis virus (AcNPV) is a registered insecticide in USA and is also now
gaining importance for being employed as recombinant vector. The recombinant
technology could be extended to the construction of noval AcNPVs with genes of B.thuringiensis d-endotoxin and insect
neuropeptides for greater effectiveness.
Thus baculovirus recombinant
vector containing s-toxin of B.
thuringiensis and insect neuropeptides could be of immense use in planning
overall strategy for insect control. Such products having multiple insect
control features needs to be carefully assessed for the risk to the health and
environment before it is licensed.
1. Risk
Assessment Factors On Environmental Release Of Genetically Manipulated
Organisms*
The following factors should
be taken into account when initial local risk assessment is being made. These
factors are essentially a list of points to aid the initial local risk
assessment. It is not expected that for any particular release proposal all the
points will be relevant. Submission of proposal for consideration by GEAC
should include the objectives of the project and should consist in the main of
information corresponding to the following points where they are relevant to a
particular proposal. The extent of the information to be provided will depend
on the type of organism and release proposed.
General: Under this heading risk assessment should, where relevant, take into
account :
1.
The
nature of the organism or the agent to be released, in the species (or
culture), its host range and pathogenicity (if any) to man, animals, plants or
micro-organisms.
2.
The
procedure used to introduce the genetic modification.
3.
The
nature of any altered nucleic acid and its source, its intended
function/purpose and the extent to which it has been characterised.
4.
Verification
of the genetic structure of the novel organism.
5.
Genetic
stability of the novel organism.
6.
Effects
that the manipulation may be predicted to have on the behaviour of the organism
in its natural habitat.
7.
The
ability of the organism to form long-term survival forms, e.g. spores, seeds
etc. and the effect the altered nucleic acid may have on this ability.
8.
Details
of any target biota (e.g. pest in the case of a pest control agent); known
effects of non-manipulated organism and predicted effects of manipulated
organism.
*ACGM/HSE/NOTE6
Release to the Environment: Information on the nature, method and magnitude of
the release is important in assessing potential risk. The following points
should be considered:
1.
Geographical
location, size and nature of the site of release and, physical and biological
proximity to man and other significant biota. In the case of plants, proximity
to plants which might be cross pollinated.
2.
Details
of the target ecosystem, and the predicted effects of release on that
ecosystem.
3.
Method
and amount of release, rate frequency and duration of application.
4.
Monitoring
capabilities and intentions; how many novel organism be traced e.g. to measure
effectiveness of application.
5.
On-site
worker safety procedures and facilities.
6.
Contigency
plans in event of unanticipated effects of novel organism.
Survival and Dissemination: The survival, persistence and dissemination of a
released novel organism clearly has a major bearing on environmental consequences.
This is especially so if the organism persists beyond the time required for its
intended purpose. To evaluate this aspect, the following points should be
considered:
1.
Growth
and survival characteristics of the host organism and the effect the
manipulation may have.
2.
Susceptibility
to temperature, humidity, dessication, UV etc, and ecological stresses.
3.
Details
of any modification to the organism designed to effect its ability to survive
and to transfer genetic material.
4.
Potential
for transfer of inserted DNA to other organisms including methods for
monitoring survival and transfer.
5.
Methods
to control or eliminate any superfluous organism or nucleic acid surviving in
the environment or possibly in a product.
It is suggested that various processes and procedures can be
assessed qualitatively by means of a check list, for according approval to a
laboratory for carrying out recombinant DNA technology work. The check list
suggested are as follows:
1. Locality: -
Urban
- Rural
2. Proximity to susceptible stock - which
stock, specify
3. Restricted
public assess -
Fenced
-
Guarded
-
Locks
4. Staff Identification -
Staff movement restrictions
5. Safety
against -
Flood
-
Subsidence
-
Landslide
-
Earthquake
-
Other
6. Is there room for development - Specify
with diagram
7. Building -
Generally suitable
-
Old
-
New
-Conventional/Prefabricated/Other
-
Windows -
Double
-
Sealed
-
Shatter proof
-
Doors -
Self closing
-
Interlocked at airlocks
-
Vision panel
-
Marked sign-HAZARDS
- Walls -
Suitable surfaces
- Floors -
Cleanable
- Ceiling -
Sealed entry of services
- Lighting -
As per requirement
8. Laboratory
fittings: -
Surfaces
-
Benches -
Impervious
-
Continuous
-
Safety equipments -
Microbiological safety Cabinets
Class
1
Class
2
Class
3
-
Protected centrifuges
-
Protected sonicators
-
Protecteds homogenisers
-
Tapes -
Hand
-
Wrist
-
Foot
-
Electronic
-
Space -
Adequate
-
Overcrowded
9. Ventilation:
Infective agent handling area
-
Air pressure -
Negative to atmosphere
-
Negative pressure
-
Monitoring Manometers
-
Frequency observation
-
Recording
-
Electronic
-
Temperature control humidity
-
Air locks -
Sophisticated
-
Simple
-
Separately ventilated
-
Exhaust air -H.E.P.A.
filters
Single
Double
Quality
of Filter
-
Monitoring
-
Testing methods
-
Filter Container -
Ledder frame
Canisters
-
Input air -
Filtered
-
Quality
-
Temperature, etc.
- Input/Extract -
Interlocked
- Stand
by Generating System -
Specify capacity etc.
10. Range
of work -
Research
-
Vaccine production
-
Large animal work
-
Small animal work
-
Diagnosis
-
Other
11. Effluent
treatment -
Heat
-
Chemical
-
Irradiation
-
Other
12. Storage
of infective material -
Location
-
Minus 20oc
-
Minus 70oc
-
Liquid Nitrogen
-
Locked
-
Upto date records
-
Secure area
13. Pass-out
facilities -
Autoclaves
-
Fumigation cabinets
-
Monitoring
-
Photocopying
-
Facsimile machine
14. Structure-Disease
Security Department
15. Disease
Security Regulations
16. Other
Security
17. Fire
precautions
18. Staff
training
19. Staff
selection
20. Visitors
regulations
21. Procedures
and provisions for emergencies
N. B. : The Check List has been
prepared keeping in view the standard requirement of P1 to Pa laboratories.